Variant report

Variant	rs12503449
Chromosome Location	chr4:130256317-130256318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12505946	1.00[AFR][1000 genomes]
rs12508527	1.00[AFR][1000 genomes]
rs12510780	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879932	chr4:130167642-130264517	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130251000-130257200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr4:130251000-130262800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr4:130255000-130257000	Enhancers	Fetal Lung	lung
4	chr4:130255200-130256800	Enhancers	Fetal Kidney	kidney
5	chr4:130256000-130256800	Enhancers	Fetal Brain Male	brain
6	chr4:130256000-130258200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:130256000-130259600	Enhancers	Fetal Brain Female	brain
8	chr4:130256200-130256400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr4:130256200-130258000	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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