Variant report

Variant	rs12510780
Chromosome Location	chr4:130277583-130277584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10034921	1.00[EUR][1000 genomes]
rs12503449	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12508238	1.00[EUR][1000 genomes]
rs28651738	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1805721	chr4:130277165-130282466	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
4	esv1811943	chr4:130277165-130282466	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130275400-130279600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:130275600-130277600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:130276000-130277600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:130276200-130277600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:130276600-130279600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:130276800-130279600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:130276800-130279800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:130277000-130277800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:130277000-130279800	Weak transcription	Fetal Lung	lung
10	chr4:130277200-130277800	Enhancers	Fetal Heart	heart
11	chr4:130277200-130279600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:130277200-130279800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:130277200-130284000	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:130277400-130279000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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