Variant report

Variant	rs12505523
Chromosome Location	chr4:90018453-90018454
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10433948	0.84[EUR][1000 genomes]
rs10433949	0.84[EUR][1000 genomes]
rs11725475	0.83[AMR][1000 genomes]
rs11725938	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11726708	0.84[EUR][1000 genomes]
rs3733448	0.81[EUR][1000 genomes]
rs59684168	0.85[AMR][1000 genomes]
rs60770708	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61315828	0.85[AMR][1000 genomes]
rs66500341	0.81[EUR][1000 genomes]
rs67412466	0.84[EUR][1000 genomes]
rs72613157	0.84[EUR][1000 genomes]
rs9790655	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1007025	chr4:89837734-90098046	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537176	chr4:89837734-90098046	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3438110	chr4:90016954-90019802	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3395246	chr4:90017079-90019427	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3398416	chr4:90017529-90019127	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv1817415	chr4:90017728-90019205	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv292694	chr4:90018330-90018489	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90017200-90031600	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links