Variant report

Variant	rs11725475
Chromosome Location	chr4:89999843-89999844
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:89992679..89996813-chr4:89997932..90000430,5	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10004795	0.84[ASN][1000 genomes]
rs10433948	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10433949	1.00[CEU][hapmap];0.81[YRI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11097216	1.00[CEU][hapmap];0.87[ASN][1000 genomes]
rs11725938	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11726708	1.00[CEU][hapmap];0.82[YRI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12505427	0.86[ASN][1000 genomes]
rs12505523	0.83[AMR][1000 genomes]
rs12505696	0.86[ASN][1000 genomes]
rs12507131	1.00[CEU][hapmap];0.87[ASN][1000 genomes]
rs12508371	0.80[ASN][1000 genomes]
rs12508524	0.88[ASN][1000 genomes]
rs12509305	0.86[ASN][1000 genomes]
rs13129885	0.86[ASN][1000 genomes]
rs13146548	0.86[ASN][1000 genomes]
rs1398942	0.86[ASN][1000 genomes]
rs1533293	1.00[CEU][hapmap];0.87[ASN][1000 genomes]
rs3733448	0.88[CEU][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59684168	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60770708	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61315828	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62304448	0.82[ASN][1000 genomes]
rs66475381	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66500341	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67412466	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67850063	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6817766	1.00[CEU][hapmap];0.87[ASN][1000 genomes]
rs6825998	0.82[ASN][1000 genomes]
rs6849540	0.82[ASN][1000 genomes]
rs72613157	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9790655	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9994655	1.00[CEU][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1007025	chr4:89837734-90098046	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537176	chr4:89837734-90098046	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv436954	chr4:89984278-90003086	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89996400-90009800	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links