Variant report

Variant	rs6825998
Chromosome Location	chr4:90011642-90011643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:89994149..89996118-chr4:90010603..90012970,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10004795	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10015415	0.81[CHB][hapmap]
rs10433949	0.89[CHD][hapmap];0.88[JPT][hapmap]
rs10470936	0.82[JPT][hapmap]
rs11097216	0.88[JPT][hapmap]
rs11725475	0.82[ASN][1000 genomes]
rs11726708	0.88[JPT][hapmap]
rs12502070	0.93[ASN][1000 genomes]
rs12505696	0.84[CEU][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap]
rs12507131	0.88[JPT][hapmap]
rs12508524	0.86[CHD][hapmap];0.88[JPT][hapmap]
rs12509305	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs1398942	0.86[CHD][hapmap];0.88[JPT][hapmap]
rs1533292	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1533293	0.88[JPT][hapmap]
rs1795739	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2904259	0.91[GIH][hapmap]
rs4367140	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4627822	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs59684168	0.84[ASN][1000 genomes]
rs59799062	0.89[ASN][1000 genomes]
rs60770708	0.80[ASN][1000 genomes]
rs61315828	0.84[ASN][1000 genomes]
rs62304448	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67706608	0.91[ASN][1000 genomes]
rs6817766	0.89[CHD][hapmap];0.88[JPT][hapmap]
rs6828137	0.86[CHD][hapmap]
rs6838424	0.82[JPT][hapmap]
rs6849143	0.87[CHD][hapmap]
rs6849540	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852928	0.87[CHD][hapmap]
rs72877639	0.90[ASN][1000 genomes]
rs7671167	0.91[GIH][hapmap]
rs9994655	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1007025	chr4:89837734-90098046	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537176	chr4:89837734-90098046	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90011600-90012600	Weak transcription	Duodenum Mucosa	Duodenum

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