Variant report

Variant	rs12505837
Chromosome Location	chr4:78333381-78333382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10016230	0.88[CEU][hapmap];0.89[GIH][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11930470	0.83[AMR][1000 genomes]
rs11936421	0.81[CEU][hapmap];0.89[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.87[AMR][1000 genomes]
rs12498728	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12499311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12500776	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12501577	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12502346	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12503990	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12506515	0.87[AMR][1000 genomes]
rs12506585	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs12511631	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17002580	0.81[CEU][hapmap];0.89[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.87[AMR][1000 genomes]
rs1806738	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1806786	0.88[CEU][hapmap];0.89[GIH][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1962168	0.89[GIH][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs1962351	0.81[EUR][1000 genomes]
rs28413838	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28437320	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28454139	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28522639	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2866287	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2866288	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2866289	0.83[EUR][1000 genomes]
rs2866290	0.81[EUR][1000 genomes]
rs28711853	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2903240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4282207	0.88[CEU][hapmap];0.85[GIH][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4579145	0.88[CEU][hapmap];0.89[GIH][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55905288	0.81[EUR][1000 genomes]
rs57104380	0.81[EUR][1000 genomes]
rs59732128	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6650924	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67084501	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67295944	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67714872	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67955395	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72648554	0.87[AMR][1000 genomes]
rs72648556	0.87[AMR][1000 genomes]
rs72648557	0.87[AMR][1000 genomes]
rs72648559	0.87[AMR][1000 genomes]
rs72648560	0.87[AMR][1000 genomes]
rs72648563	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72648565	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72648566	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72648573	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72648575	0.81[EUR][1000 genomes]
rs72648578	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72648580	0.91[ASN][1000 genomes]
rs72648581	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72648583	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72648584	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72648585	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72648586	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72650413	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72864744	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7674431	0.81[EUR][1000 genomes]
rs7695467	0.89[GIH][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs9990691	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv594698	chr4:78291876-78334483	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78332400-78333400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:78332600-78333600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:78332800-78333400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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