Variant report

Variant	rs72650413
Chromosome Location	chr4:78331843-78331844
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10016230	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11930470	0.83[AMR][1000 genomes]
rs11936421	0.87[AMR][1000 genomes]
rs12500776	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12501577	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12502346	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12503990	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12505837	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12506515	0.87[AMR][1000 genomes]
rs12506585	0.87[AMR][1000 genomes]
rs12511631	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17002580	0.87[AMR][1000 genomes]
rs1806738	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1806786	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28413838	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28437320	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28454139	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28522639	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2866287	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2866288	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28711853	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4282207	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4579145	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59732128	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6650924	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67084501	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67295944	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67714872	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67955395	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72648554	0.87[AMR][1000 genomes]
rs72648556	0.87[AMR][1000 genomes]
rs72648557	0.87[AMR][1000 genomes]
rs72648559	0.87[AMR][1000 genomes]
rs72648560	0.87[AMR][1000 genomes]
rs72648563	0.83[AMR][1000 genomes]
rs72648565	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72648566	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72648573	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72648578	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72648581	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72648583	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72648584	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72648585	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72648586	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72864744	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9990691	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv594698	chr4:78291876-78334483	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78331800-78333000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links