Variant report

Variant	rs12513234
Chromosome Location	chr4:44928851-44928852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10000940	0.85[EUR][1000 genomes]
rs10001739	0.85[EUR][1000 genomes]
rs10003579	0.84[EUR][1000 genomes]
rs10003776	0.85[EUR][1000 genomes]
rs10003984	0.85[EUR][1000 genomes]
rs10004173	0.85[EUR][1000 genomes]
rs10006643	0.85[EUR][1000 genomes]
rs10031439	0.85[EUR][1000 genomes]
rs10034588	0.85[EUR][1000 genomes]
rs10433683	0.87[EUR][1000 genomes]
rs10433684	0.86[EUR][1000 genomes]
rs10461061	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10938372	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10938378	0.85[EUR][1000 genomes]
rs11726237	0.85[EUR][1000 genomes]
rs11727488	0.85[EUR][1000 genomes]
rs11730391	0.85[EUR][1000 genomes]
rs12501461	0.85[EUR][1000 genomes]
rs12502784	0.85[EUR][1000 genomes]
rs12503075	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12504288	0.85[EUR][1000 genomes]
rs12505440	0.84[EUR][1000 genomes]
rs12512128	0.85[EUR][1000 genomes]
rs12512173	0.85[EUR][1000 genomes]
rs13114174	0.84[EUR][1000 genomes]
rs13123198	0.85[EUR][1000 genomes]
rs13123623	0.83[EUR][1000 genomes]
rs13125752	0.85[EUR][1000 genomes]
rs13145245	0.85[EUR][1000 genomes]
rs1390915	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1390923	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1497000	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1497003	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1948587	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28712193	0.87[EUR][1000 genomes]
rs2882027	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34298665	0.83[EUR][1000 genomes]
rs34398887	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34625281	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34725881	0.83[EUR][1000 genomes]
rs35739449	0.84[EUR][1000 genomes]
rs4264865	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4267770	0.85[EUR][1000 genomes]
rs4280774	0.84[EUR][1000 genomes]
rs4410559	0.80[EUR][1000 genomes]
rs4447894	0.85[EUR][1000 genomes]
rs4456993	0.84[EUR][1000 genomes]
rs4464602	0.85[EUR][1000 genomes]
rs4467605	0.85[EUR][1000 genomes]
rs4481265	0.85[EUR][1000 genomes]
rs4492035	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs4558900	0.85[EUR][1000 genomes]
rs4560452	0.86[EUR][1000 genomes]
rs4571371	0.84[EUR][1000 genomes]
rs4621472	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4635847	0.85[EUR][1000 genomes]
rs4639112	0.85[EUR][1000 genomes]
rs4695069	0.89[CEU][hapmap];0.80[JPT][hapmap]
rs5002959	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62409744	0.84[EUR][1000 genomes]
rs62411580	0.83[EUR][1000 genomes]
rs62411584	0.83[EUR][1000 genomes]
rs6447395	0.83[EUR][1000 genomes]
rs6447397	0.83[EUR][1000 genomes]
rs6447398	0.83[EUR][1000 genomes]
rs6447399	0.81[EUR][1000 genomes]
rs6447400	0.81[EUR][1000 genomes]
rs6447402	0.82[EUR][1000 genomes]
rs6820860	0.85[EUR][1000 genomes]
rs6822744	0.85[EUR][1000 genomes]
rs6823446	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6823641	0.84[EUR][1000 genomes]
rs6828498	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6832190	0.84[EUR][1000 genomes]
rs6848088	0.85[EUR][1000 genomes]
rs6848089	0.85[EUR][1000 genomes]
rs6848542	0.84[EUR][1000 genomes]
rs6855537	0.84[EUR][1000 genomes]
rs73244658	0.82[ASN][1000 genomes]
rs7655634	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7657077	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7658399	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7677319	0.86[EUR][1000 genomes]
rs7678059	0.87[EUR][1000 genomes]
rs7682854	0.87[EUR][1000 genomes]
rs7698277	0.87[EUR][1000 genomes]
rs7699473	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1013488	chr4:44543808-44976123	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv915992	chr4:44705614-44972966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv432591	chr4:44922068-45017576	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:44928400-44929000	Enhancers	Psoas Muscle	Psoas
2	chr4:44928800-44929000	Enhancers	Fetal Heart	heart

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