Variant report

Variant	rs6823446
Chromosome Location	chr4:44955247-44955248
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10000940	0.87[EUR][1000 genomes]
rs10001739	0.87[EUR][1000 genomes]
rs10003579	0.87[EUR][1000 genomes]
rs10003776	0.87[EUR][1000 genomes]
rs10003984	0.87[EUR][1000 genomes]
rs10004173	0.87[EUR][1000 genomes]
rs10006643	0.87[EUR][1000 genomes]
rs10031439	0.87[EUR][1000 genomes]
rs10034588	0.87[EUR][1000 genomes]
rs10433683	0.89[EUR][1000 genomes]
rs10433684	0.89[EUR][1000 genomes]
rs10461061	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10938372	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10938378	0.87[EUR][1000 genomes]
rs11726237	0.87[EUR][1000 genomes]
rs11727488	0.87[EUR][1000 genomes]
rs11730391	0.87[EUR][1000 genomes]
rs12501461	0.87[EUR][1000 genomes]
rs12502784	0.87[EUR][1000 genomes]
rs12503075	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12504288	0.87[EUR][1000 genomes]
rs12505440	0.87[EUR][1000 genomes]
rs12512128	0.87[EUR][1000 genomes]
rs12512173	0.87[EUR][1000 genomes]
rs12513234	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13114174	0.86[EUR][1000 genomes]
rs13123198	0.87[EUR][1000 genomes]
rs13123623	0.86[EUR][1000 genomes]
rs13125752	0.87[EUR][1000 genomes]
rs13145245	0.87[EUR][1000 genomes]
rs1390915	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1390923	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1497000	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1497003	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1948587	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28712193	0.89[EUR][1000 genomes]
rs2882027	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34298665	0.85[EUR][1000 genomes]
rs34398887	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34625281	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34725881	0.85[EUR][1000 genomes]
rs35739449	0.87[EUR][1000 genomes]
rs4264865	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4267770	0.87[EUR][1000 genomes]
rs4280774	0.86[EUR][1000 genomes]
rs4410559	0.82[EUR][1000 genomes]
rs4447894	0.87[EUR][1000 genomes]
rs4456993	0.87[EUR][1000 genomes]
rs4464602	0.87[EUR][1000 genomes]
rs4467605	0.87[EUR][1000 genomes]
rs4481265	0.87[EUR][1000 genomes]
rs4558900	0.87[EUR][1000 genomes]
rs4560452	0.88[EUR][1000 genomes]
rs4571371	0.86[EUR][1000 genomes]
rs4621472	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4635847	0.87[EUR][1000 genomes]
rs4639112	0.87[EUR][1000 genomes]
rs5002959	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62409744	0.86[EUR][1000 genomes]
rs62411580	0.85[EUR][1000 genomes]
rs62411584	0.86[EUR][1000 genomes]
rs6447395	0.85[EUR][1000 genomes]
rs6447397	0.85[EUR][1000 genomes]
rs6447398	0.85[EUR][1000 genomes]
rs6447399	0.84[EUR][1000 genomes]
rs6447400	0.84[EUR][1000 genomes]
rs6447402	0.85[EUR][1000 genomes]
rs6820860	0.87[EUR][1000 genomes]
rs6822744	0.87[EUR][1000 genomes]
rs6823641	0.86[EUR][1000 genomes]
rs6828498	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832190	0.87[EUR][1000 genomes]
rs6848088	0.87[EUR][1000 genomes]
rs6848089	0.87[EUR][1000 genomes]
rs6848542	0.86[EUR][1000 genomes]
rs6855537	0.87[EUR][1000 genomes]
rs7655634	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7657077	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7658399	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7677319	0.89[EUR][1000 genomes]
rs7678059	0.89[EUR][1000 genomes]
rs7682854	0.89[EUR][1000 genomes]
rs7698277	0.89[EUR][1000 genomes]
rs7699473	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1013488	chr4:44543808-44976123	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv915992	chr4:44705614-44972966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv432591	chr4:44922068-45017576	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv432592	chr4:44932439-45005872	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv432594	chr4:44932945-45033572	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1014721	chr4:44950223-44999607	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	nsv432595	chr4:44951672-45010972	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	nsv432596	chr4:44951672-45037672	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:44930000-44959400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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