Variant report

Variant	rs1251533
Chromosome Location	chr1:76429903-76429904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10873797	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11161848	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12138898	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1251584	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1630302	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1770882	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1796795	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1796810	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2029682	0.81[ASN][1000 genomes]
rs5745545	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs879268	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76421000-76430000	Weak transcription	HMEC	breast
2	chr1:76429400-76430800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:76429600-76430200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:76429600-76430200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:76429600-76430800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:76429800-76430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:76429800-76430200	Weak transcription	Osteobl	bone
8	chr1:76429800-76430400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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