Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1001160	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs10873797	0.81[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11161848	0.81[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11161902	1.00[JPT][hapmap]
rs1159215	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs12043473	1.00[JPT][hapmap]
rs12138898	0.94[ASN][1000 genomes]
rs1251533	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1251584	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1628063	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs1630302	0.94[ASN][1000 genomes]
rs1630587	1.00[JPT][hapmap]
rs1689270	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1770882	0.82[ASN][1000 genomes]
rs1770889	1.00[JPT][hapmap]
rs1796795	0.94[ASN][1000 genomes]
rs1796810	0.94[ASN][1000 genomes]
rs1796813	1.00[JPT][hapmap]
rs1796815	1.00[JPT][hapmap]
rs1796827	1.00[JPT][hapmap]
rs1856791	1.00[JPT][hapmap]
rs2029682	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs5745331	0.81[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs5745347	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs5745383	1.00[JPT][hapmap]
rs5745394	1.00[JPT][hapmap]
rs5745430	1.00[JPT][hapmap]
rs5745543	1.00[JPT][hapmap]
rs5745545	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs5745547	1.00[JPT][hapmap]
rs6593520	1.00[JPT][hapmap]
rs6593521	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76467000-76476600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:76471400-76473000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:76472400-76473000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:76472400-76473600	Enhancers	Fetal Stomach	stomach
5	chr1:76472800-76473000	Enhancers	Duodenum Smooth Muscle	Duodenum

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