Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12402230	0.85[ASN][1000 genomes]
rs1251539	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1251556	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1251560	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1251579	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1251580	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1251581	0.86[ASN][1000 genomes]
rs1251582	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1251587	0.86[ASN][1000 genomes]
rs1251588	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1251591	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1251594	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12732495	0.83[ASN][1000 genomes]
rs1361487	0.80[ASN][1000 genomes]
rs1796812	0.81[ASN][1000 genomes]
rs1873894	0.81[ASN][1000 genomes]
rs4949681	0.81[ASN][1000 genomes]
rs58722308	0.86[ASN][1000 genomes]
rs7521538	0.86[ASN][1000 genomes]
rs7524665	0.89[ASN][1000 genomes]
rs931506	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76421000-76430000	Weak transcription	HMEC	breast

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