Variant report

Variant	rs931506
Chromosome Location	chr1:76401349-76401350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:76401333-76401597	HepG2	liver:	n/a	chr1:76401435-76401448 chr1:76401435-76401446 chr1:76401437-76401448 chr1:76401435-76401448
2	CEBPB	chr1:76401284-76401590	K562	blood:	n/a	chr1:76401435-76401448 chr1:76401435-76401446 chr1:76401437-76401448 chr1:76401435-76401448

Variant related genes	Relation type
ASB17	TF binding region

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1021462	0.83[JPT][hapmap]
rs1021464	0.85[ASN][1000 genomes]
rs10732724	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10873738	0.83[JPT][hapmap]
rs10873804	0.81[JPT][hapmap]
rs11161852	0.83[JPT][hapmap]
rs11161887	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs11162053	0.83[ASN][1000 genomes]
rs11162066	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1144328	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs1144331	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs1144333	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs1144337	0.86[JPT][hapmap]
rs1144342	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs1146645	1.00[CEU][hapmap]
rs1146647	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs1146648	0.81[JPT][hapmap]
rs1146649	1.00[CEU][hapmap];0.80[CHB][hapmap];0.87[JPT][hapmap]
rs1146651	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs1146652	1.00[CEU][hapmap];0.80[CHB][hapmap];0.87[JPT][hapmap]
rs12022506	0.81[ASN][1000 genomes]
rs12044211	0.83[JPT][hapmap]
rs12064158	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs12076093	0.81[JPT][hapmap]
rs12090712	0.82[JPT][hapmap]
rs12095069	0.83[ASN][1000 genomes]
rs12401729	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs12402230	0.92[ASN][1000 genomes]
rs12402347	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12405994	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12408897	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12410373	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs12410724	0.83[ASN][1000 genomes]
rs1251272	0.80[JPT][hapmap]
rs1251274	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap]
rs1251539	0.82[ASN][1000 genomes]
rs1251556	0.82[ASN][1000 genomes]
rs1251560	0.81[ASN][1000 genomes]
rs1251579	0.90[ASN][1000 genomes]
rs1251580	0.90[ASN][1000 genomes]
rs1251581	0.86[ASN][1000 genomes]
rs1251583	0.81[ASN][1000 genomes]
rs1251587	0.86[ASN][1000 genomes]
rs1251588	0.90[ASN][1000 genomes]
rs1251591	0.88[ASN][1000 genomes]
rs1251594	0.91[ASN][1000 genomes]
rs12567390	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs12703	1.00[CEU][hapmap];0.80[CHB][hapmap];0.87[JPT][hapmap]
rs12732495	0.90[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs1303870	0.81[JPT][hapmap]
rs1340684	0.83[ASN][1000 genomes]
rs1361487	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1417402	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1438175	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1438176	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1498313	0.81[JPT][hapmap]
rs1586936	0.85[ASN][1000 genomes]
rs1603734	0.83[JPT][hapmap]
rs1689271	0.85[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs17097681	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17097695	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs17097821	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17097836	0.83[ASN][1000 genomes]
rs17097837	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17097841	0.83[ASN][1000 genomes]
rs17097863	0.83[ASN][1000 genomes]
rs17097864	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17097867	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17649675	0.83[JPT][hapmap]
rs1796812	0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1873894	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890967	0.83[ASN][1000 genomes]
rs1908089	0.83[JPT][hapmap]
rs1938321	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1938323	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2066213	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs2307077	0.86[JPT][hapmap]
rs34574524	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3765682	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs3795251	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs3920847	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4949619	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4949681	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4949685	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5745327	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs5745343	0.86[JPT][hapmap]
rs5745354	0.80[JPT][hapmap]
rs5745392	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs5745451	0.86[JPT][hapmap]
rs5745465	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs5745523	0.86[JPT][hapmap]
rs5745532	0.83[JPT][hapmap]
rs5745542	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs5745546	0.87[JPT][hapmap]
rs58722308	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6693002	0.80[ASN][1000 genomes]
rs7418941	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7514912	0.83[JPT][hapmap]
rs7520312	0.81[ASN][1000 genomes]
rs7521538	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7524665	0.91[ASN][1000 genomes]
rs7545057	0.83[JPT][hapmap]
rs7548391	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1004669	chr1:76301198-76409451	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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