Variant report

Variant	rs1438175
Chromosome Location	chr1:76474728-76474729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76469959..76472531-chr1:76473869..76475395,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11161887	0.82[CHB][hapmap]
rs11162053	0.94[ASN][1000 genomes]
rs11162066	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1144333	0.81[CHB][hapmap]
rs12064158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12095069	0.94[ASN][1000 genomes]
rs12401729	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs12402347	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12405994	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12408897	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12410724	0.94[ASN][1000 genomes]
rs1251274	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs1251531	0.85[ASN][1000 genomes]
rs1251539	0.87[ASN][1000 genomes]
rs1251550	0.85[ASN][1000 genomes]
rs1251551	0.85[ASN][1000 genomes]
rs1251556	0.87[ASN][1000 genomes]
rs1251560	0.87[ASN][1000 genomes]
rs12567390	0.81[CHB][hapmap]
rs12732495	0.86[CHB][hapmap]
rs1340684	0.95[ASN][1000 genomes]
rs1361487	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1417402	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1438176	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1658737	0.85[ASN][1000 genomes]
rs1689271	0.82[CHB][hapmap]
rs17097681	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs17097695	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs17097821	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17097836	0.94[ASN][1000 genomes]
rs17097837	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17097841	0.94[ASN][1000 genomes]
rs17097863	0.94[ASN][1000 genomes]
rs17097864	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17097867	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1770876	0.85[ASN][1000 genomes]
rs1796799	0.85[ASN][1000 genomes]
rs1796812	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs1873894	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1890967	0.94[ASN][1000 genomes]
rs1938321	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1938322	0.85[ASN][1000 genomes]
rs1938323	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2066213	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2792664	0.85[ASN][1000 genomes]
rs34574524	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3765682	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap]
rs3920847	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4949619	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4949681	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4949685	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5745465	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs5745542	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs58722308	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7418941	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7521538	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs931506	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76467000-76476600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:76474400-76475400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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