Variant report

Variant	rs17097867
Chromosome Location	chr1:76471614-76471615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76465512..76468433-chr1:76470100..76472168,2	K562	blood:
2	chr1:76469959..76472531-chr1:76473869..76475395,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11161887	0.81[CHB][hapmap]
rs11162053	0.99[ASN][1000 genomes]
rs11162066	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs1144333	0.80[CHB][hapmap]
rs1146652	1.00[CEU][hapmap]
rs12064158	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs12095069	0.99[ASN][1000 genomes]
rs12401729	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs12402230	0.80[ASN][1000 genomes]
rs12402347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12405994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12408897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12410724	0.99[ASN][1000 genomes]
rs1251274	1.00[CEU][hapmap]
rs1251531	0.89[ASN][1000 genomes]
rs1251539	0.91[ASN][1000 genomes]
rs1251550	0.89[ASN][1000 genomes]
rs1251551	0.89[ASN][1000 genomes]
rs1251556	0.91[ASN][1000 genomes]
rs1251560	0.92[ASN][1000 genomes]
rs1251579	0.84[ASN][1000 genomes]
rs1251580	0.84[ASN][1000 genomes]
rs1251581	0.80[ASN][1000 genomes]
rs1251587	0.80[ASN][1000 genomes]
rs1251588	0.84[ASN][1000 genomes]
rs1251591	0.82[ASN][1000 genomes]
rs1251594	0.82[ASN][1000 genomes]
rs12567390	0.80[CHB][hapmap]
rs12732495	0.85[CHB][hapmap]
rs1340684	1.00[ASN][1000 genomes]
rs1361487	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1417402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1438175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1438176	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1658737	0.89[ASN][1000 genomes]
rs1689271	0.81[CHB][hapmap]
rs17097681	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs17097695	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs17097821	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17097836	0.99[ASN][1000 genomes]
rs17097837	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17097841	0.99[ASN][1000 genomes]
rs17097863	0.99[ASN][1000 genomes]
rs17097864	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1770876	0.89[ASN][1000 genomes]
rs1796799	0.89[ASN][1000 genomes]
rs1796812	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs1873894	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1890967	0.99[ASN][1000 genomes]
rs1938321	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1938322	0.89[ASN][1000 genomes]
rs1938323	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2066213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2792664	0.89[ASN][1000 genomes]
rs34574524	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3765682	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap]
rs3920847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4949619	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4949681	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4949685	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5745465	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs5745542	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs58722308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7418941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7521538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7524665	0.82[ASN][1000 genomes]
rs931506	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76467000-76476600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:76470800-76471800	Enhancers	Rectal Smooth Muscle	rectum
3	chr1:76470800-76472000	Enhancers	Fetal Stomach	stomach
4	chr1:76471000-76472600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:76471000-76472800	Enhancers	Colon Smooth Muscle	Colon
6	chr1:76471200-76472000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr1:76471400-76472400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:76471400-76472600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr1:76471400-76473000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:76471600-76472200	Enhancers	Ovary	ovary
11	chr1:76471600-76472200	Enhancers	Stomach Smooth Muscle	stomach

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