Variant report

Variant	rs1340684
Chromosome Location	chr1:76471146-76471147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76465512..76468433-chr1:76470100..76472168,2	K562	blood:
2	chr1:76469959..76472531-chr1:76473869..76475395,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs11161887	0.82[CHB][hapmap]
rs11162047	0.89[AFR][1000 genomes]
rs11162053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11162065	0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs11162066	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs1144331	1.00[CEU][hapmap]
rs1144333	0.81[CHB][hapmap]
rs1144337	1.00[CEU][hapmap]
rs1144342	1.00[CEU][hapmap]
rs1146651	1.00[CEU][hapmap]
rs12064158	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12095069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12401729	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12402230	0.80[ASN][1000 genomes]
rs12402347	0.96[ASN][1000 genomes]
rs12405994	0.96[ASN][1000 genomes]
rs12408897	0.96[ASN][1000 genomes]
rs12410724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1251274	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs1251531	0.89[ASN][1000 genomes]
rs1251539	0.91[ASN][1000 genomes]
rs1251550	0.89[ASN][1000 genomes]
rs1251551	0.89[ASN][1000 genomes]
rs1251556	0.91[ASN][1000 genomes]
rs1251560	0.92[ASN][1000 genomes]
rs1251579	0.84[ASN][1000 genomes]
rs1251580	0.84[ASN][1000 genomes]
rs1251581	0.80[ASN][1000 genomes]
rs1251587	0.80[ASN][1000 genomes]
rs1251588	0.84[ASN][1000 genomes]
rs1251591	0.82[ASN][1000 genomes]
rs1251594	0.82[ASN][1000 genomes]
rs12567390	0.81[CHB][hapmap]
rs12732495	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1361487	0.94[ASN][1000 genomes]
rs1417402	0.96[ASN][1000 genomes]
rs1438175	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs1438176	0.99[ASN][1000 genomes]
rs1658737	0.89[ASN][1000 genomes]
rs1689271	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs17097681	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs17097695	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs17097821	0.99[ASN][1000 genomes]
rs17097836	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17097837	0.99[ASN][1000 genomes]
rs17097841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17097857	0.85[AFR][1000 genomes]
rs17097863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17097864	0.99[ASN][1000 genomes]
rs17097867	1.00[ASN][1000 genomes]
rs1770876	0.89[ASN][1000 genomes]
rs1796799	0.89[ASN][1000 genomes]
rs1796812	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1873894	0.83[ASN][1000 genomes]
rs1890967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938321	0.95[ASN][1000 genomes]
rs1938322	0.89[ASN][1000 genomes]
rs1938323	0.99[ASN][1000 genomes]
rs2066213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2792664	0.89[ASN][1000 genomes]
rs34574524	0.99[ASN][1000 genomes]
rs3765682	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs3920847	0.96[ASN][1000 genomes]
rs4949619	0.99[ASN][1000 genomes]
rs4949681	0.83[ASN][1000 genomes]
rs4949685	0.99[ASN][1000 genomes]
rs5745343	1.00[CEU][hapmap]
rs5745354	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs5745392	1.00[CEU][hapmap]
rs5745465	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs5745542	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs58722308	0.88[ASN][1000 genomes]
rs7418941	0.96[ASN][1000 genomes]
rs7521538	0.88[ASN][1000 genomes]
rs7524665	0.82[ASN][1000 genomes]
rs931506	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76467000-76476600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:76470800-76471800	Enhancers	Rectal Smooth Muscle	rectum
3	chr1:76470800-76472000	Enhancers	Fetal Stomach	stomach
4	chr1:76471000-76471400	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr1:76471000-76472600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:76471000-76472800	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links