Variant report

Variant	rs17097681
Chromosome Location	chr1:76376926-76376927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs1021462	0.87[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs1021464	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10732724	0.91[JPT][hapmap]
rs10873738	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs10873804	0.86[JPT][hapmap]
rs11161447	0.83[CHB][hapmap]
rs11161465	0.82[CHB][hapmap]
rs11161602	0.82[CHB][hapmap]
rs11161704	0.84[EUR][1000 genomes]
rs11161731	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs11161852	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs11161887	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs11162066	0.86[CHB][hapmap]
rs1144328	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs1144331	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1144333	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1144337	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1144342	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1146592	0.84[EUR][1000 genomes]
rs1146593	0.84[EUR][1000 genomes]
rs1146602	0.86[EUR][1000 genomes]
rs1146613	0.84[EUR][1000 genomes]
rs1146616	0.86[EUR][1000 genomes]
rs1146642	1.00[YRI][hapmap]
rs1146645	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1146647	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs1146648	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs1146649	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs1146651	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1146652	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs12021750	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs12022011	0.89[CHB][hapmap]
rs12024645	0.82[CHB][hapmap]
rs12032051	0.83[CHB][hapmap]
rs12033058	0.83[CHB][hapmap]
rs12044025	0.83[JPT][hapmap]
rs12044211	0.87[JPT][hapmap]
rs12064158	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs12076093	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12087636	0.88[ASN][1000 genomes]
rs12090712	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs12401729	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs12402347	0.85[EUR][1000 genomes]
rs12403889	0.84[EUR][1000 genomes]
rs12405994	0.85[EUR][1000 genomes]
rs12407107	0.82[CHB][hapmap]
rs12408897	0.85[EUR][1000 genomes]
rs12409592	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs12410373	0.86[JPT][hapmap]
rs1250876	0.81[CHB][hapmap]
rs1250880	0.81[CHB][hapmap]
rs1250882	0.88[EUR][1000 genomes]
rs1251078	0.91[CHB][hapmap]
rs1251079	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1251270	0.84[EUR][1000 genomes]
rs1251272	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1251274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12567390	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs12703	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs12732495	0.85[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12744608	0.82[CHB][hapmap]
rs1303870	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1361487	0.84[EUR][1000 genomes]
rs1417402	0.85[EUR][1000 genomes]
rs1438175	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs1438176	0.85[EUR][1000 genomes]
rs1498313	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1586936	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1603734	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs1689271	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs17097695	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17097821	0.85[EUR][1000 genomes]
rs17097837	0.85[EUR][1000 genomes]
rs17097864	0.85[EUR][1000 genomes]
rs17097867	0.85[EUR][1000 genomes]
rs17649675	0.87[JPT][hapmap]
rs1770513	0.88[CHB][hapmap]
rs1796812	0.90[JPT][hapmap]
rs1873894	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1908089	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs1938321	0.85[EUR][1000 genomes]
rs1938323	0.85[EUR][1000 genomes]
rs2047435	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2066213	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs2307077	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs34574524	0.85[EUR][1000 genomes]
rs35290302	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs3737574	0.82[CHB][hapmap]
rs3765682	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs3795251	0.86[JPT][hapmap]
rs3819949	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs3920847	0.85[EUR][1000 genomes]
rs4949619	0.85[EUR][1000 genomes]
rs4949681	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4949685	0.82[EUR][1000 genomes]
rs5745314	0.83[CHB][hapmap]
rs5745321	1.00[YRI][hapmap]
rs5745327	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs5745334	0.83[CHB][hapmap]
rs5745343	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs5745354	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs5745392	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs5745429	0.82[CHB][hapmap]
rs5745448	0.81[JPT][hapmap]
rs5745451	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs5745465	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs5745523	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs5745532	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs5745542	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5745546	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs58722308	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6687882	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs7418941	0.85[EUR][1000 genomes]
rs7514912	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7516477	0.81[CHB][hapmap]
rs7521538	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7525919	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs7545057	0.87[JPT][hapmap]
rs7548391	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7548991	0.86[CHB][hapmap]
rs931506	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9660848	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1795237	chr1:76268573-76383565	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv1800125	chr1:76269439-76379497	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1799260	chr1:76269439-76383297	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1847721	chr1:76269439-76383565	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1004669	chr1:76301198-76409451	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv871671	chr1:76304215-76391646	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv1850335	chr1:76344705-76379497	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76375800-76378000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:76376600-76377000	Enhancers	Fetal Heart	heart

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