Variant report

Variant	rs11162066
Chromosome Location	chr1:76476248-76476249
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11161887	0.81[CHB][hapmap]
rs11162053	0.93[ASN][1000 genomes]
rs1144337	0.80[CHB][hapmap]
rs1144342	0.81[CHB][hapmap]
rs12064158	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs12091251	0.80[AFR][1000 genomes]
rs12095069	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12401729	0.86[CHB][hapmap]
rs12402347	0.90[ASN][1000 genomes]
rs12405994	0.90[ASN][1000 genomes]
rs12408897	0.90[ASN][1000 genomes]
rs12410724	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1251274	0.85[CHB][hapmap]
rs1251531	0.83[ASN][1000 genomes]
rs1251539	0.85[ASN][1000 genomes]
rs1251550	0.83[ASN][1000 genomes]
rs1251551	0.83[ASN][1000 genomes]
rs1251556	0.85[ASN][1000 genomes]
rs1251560	0.86[ASN][1000 genomes]
rs12567390	0.81[CHB][hapmap]
rs12732495	0.86[CHB][hapmap]
rs1340684	0.94[ASN][1000 genomes]
rs1361487	0.88[ASN][1000 genomes]
rs1417402	0.90[ASN][1000 genomes]
rs1438175	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1438176	0.93[ASN][1000 genomes]
rs1658737	0.83[ASN][1000 genomes]
rs1689271	0.81[CHB][hapmap]
rs17097681	0.86[CHB][hapmap]
rs17097695	0.91[CHB][hapmap]
rs17097821	0.93[ASN][1000 genomes]
rs17097836	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17097837	0.93[ASN][1000 genomes]
rs17097841	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17097863	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17097864	0.93[ASN][1000 genomes]
rs17097867	0.94[ASN][1000 genomes]
rs1770876	0.83[ASN][1000 genomes]
rs1796799	0.83[ASN][1000 genomes]
rs1796812	0.86[CHB][hapmap]
rs1890967	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1938321	0.89[ASN][1000 genomes]
rs1938322	0.83[ASN][1000 genomes]
rs1938323	0.93[ASN][1000 genomes]
rs2066213	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs2792664	0.83[ASN][1000 genomes]
rs34574524	0.93[ASN][1000 genomes]
rs3765682	0.86[CHB][hapmap]
rs3920847	0.90[ASN][1000 genomes]
rs4949619	0.93[ASN][1000 genomes]
rs4949685	0.93[ASN][1000 genomes]
rs5745392	0.81[CHB][hapmap]
rs5745465	0.86[CHB][hapmap]
rs5745542	0.86[CHB][hapmap]
rs58722308	0.82[ASN][1000 genomes]
rs7418941	0.90[ASN][1000 genomes]
rs7521538	0.82[ASN][1000 genomes]
rs931506	0.95[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76467000-76476600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:76474800-76478400	Weak transcription	Primary B cells from cord blood	blood
3	chr1:76475200-76478600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:76475800-76478000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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