Variant report
| Variant | rs12091251 |
|---|---|
| Chromosome Location | chr1:76461554-76461555 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10465725 | 1.00[CEU][hapmap] |
| rs11161872 | 1.00[CEU][hapmap] |
| rs11161947 | 0.83[EUR][1000 genomes] |
| rs11162047 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11162048 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11162065 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs11162066 | 0.87[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs12068611 | 0.83[EUR][1000 genomes] |
| rs12086384 | 0.83[EUR][1000 genomes] |
| rs12086506 | 1.00[CEU][hapmap] |
| rs12089337 | 1.00[CEU][hapmap] |
| rs12090389 | 1.00[CEU][hapmap] |
| rs12095069 | 0.90[AFR][1000 genomes] |
| rs12096775 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12239656 | 0.83[EUR][1000 genomes] |
| rs12410724 | 0.90[AFR][1000 genomes] |
| rs1251536 | 0.84[EUR][1000 genomes] |
| rs1251540 | 0.84[EUR][1000 genomes] |
| rs17097567 | 1.00[CEU][hapmap] |
| rs17097696 | 1.00[CEU][hapmap] |
| rs17097707 | 1.00[CEU][hapmap] |
| rs17097710 | 1.00[CEU][hapmap] |
| rs17097836 | 0.90[AFR][1000 genomes] |
| rs17097841 | 0.90[AFR][1000 genomes] |
| rs17097857 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17097863 | 0.85[AFR][1000 genomes] |
| rs1890967 | 0.90[AFR][1000 genomes] |
| rs5745309 | 1.00[CEU][hapmap] |
| rs5745496 | 1.00[CEU][hapmap] |
| rs5745516 | 1.00[CEU][hapmap] |
| rs6692903 | 1.00[CEU][hapmap] |
| rs9970840 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998499 | chr1:76361784-76598712 | Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:76458200-76466600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr1:76461400-76461800 | Enhancers | Fetal Heart | heart |
