Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10465725	1.00[CEU][hapmap]
rs11161872	1.00[CEU][hapmap]
rs11161947	0.83[EUR][1000 genomes]
rs11162047	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11162048	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11162053	0.85[AFR][1000 genomes]
rs11162065	1.00[CEU][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12064158	0.85[AFR][1000 genomes]
rs12068611	0.83[EUR][1000 genomes]
rs12086384	0.83[EUR][1000 genomes]
rs12086506	1.00[CEU][hapmap]
rs12089337	1.00[CEU][hapmap]
rs12090389	1.00[CEU][hapmap]
rs12091251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12096775	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12239656	0.83[EUR][1000 genomes]
rs1251536	0.84[EUR][1000 genomes]
rs1251540	0.84[EUR][1000 genomes]
rs1340684	0.85[AFR][1000 genomes]
rs17097567	1.00[CEU][hapmap]
rs17097696	1.00[CEU][hapmap]
rs17097707	1.00[CEU][hapmap]
rs17097710	1.00[CEU][hapmap]
rs5745496	1.00[CEU][hapmap]
rs5745516	1.00[CEU][hapmap]
rs6692903	1.00[CEU][hapmap]
rs9970840	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76458200-76466600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search: