Variant report

Variant	rs12086506
Chromosome Location	chr1:76387553-76387554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1021464	0.89[AFR][1000 genomes]
rs10465725	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11161872	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11161915	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11162065	1.00[CEU][hapmap]
rs1146594	1.00[CEU][hapmap]
rs1146603	1.00[CEU][hapmap]
rs12074938	0.82[EUR][1000 genomes]
rs12079065	0.82[EUR][1000 genomes]
rs12079211	0.82[EUR][1000 genomes]
rs12079950	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081631	0.82[EUR][1000 genomes]
rs12089337	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12090389	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13376397	0.82[EUR][1000 genomes]
rs1586936	0.89[AFR][1000 genomes]
rs17097567	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17097696	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17097707	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17097710	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3795251	0.89[YRI][hapmap]
rs55977041	0.82[EUR][1000 genomes]
rs56322662	0.82[EUR][1000 genomes]
rs57443433	0.82[EUR][1000 genomes]
rs5745309	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs5745418	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs5745496	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs5745516	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs5745542	0.89[YRI][hapmap]
rs57798497	0.82[EUR][1000 genomes]
rs58125729	0.82[EUR][1000 genomes]
rs59723961	0.82[EUR][1000 genomes]
rs59932454	0.82[EUR][1000 genomes]
rs61612438	0.82[EUR][1000 genomes]
rs6692903	1.00[CEU][hapmap]
rs74090716	0.82[EUR][1000 genomes]
rs74090717	0.82[EUR][1000 genomes]
rs74090720	0.82[EUR][1000 genomes]
rs74090724	0.82[EUR][1000 genomes]
rs74090726	0.82[EUR][1000 genomes]
rs74090729	0.82[EUR][1000 genomes]
rs74090734	0.82[EUR][1000 genomes]
rs74090737	0.82[EUR][1000 genomes]
rs74090744	0.82[EUR][1000 genomes]
rs7512465	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9970840	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1004669	chr1:76301198-76409451	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv871671	chr1:76304215-76391646	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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