Variant report
Variant | rs11161915 |
---|---|
Chromosome Location | chr1:76406252-76406253 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1021464 | 0.88[AFR][1000 genomes] |
rs10465725 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
rs11161872 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes] |
rs11162065 | 1.00[CEU][hapmap] |
rs1144331 | 0.82[YRI][hapmap] |
rs1144337 | 0.81[YRI][hapmap] |
rs1144342 | 0.82[YRI][hapmap] |
rs1146594 | 1.00[CEU][hapmap] |
rs1146603 | 1.00[CEU][hapmap] |
rs1146651 | 0.82[YRI][hapmap] |
rs12079950 | 0.99[AFR][1000 genomes];0.87[AMR][1000 genomes] |
rs12086506 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs12089337 | 1.00[CEU][hapmap];0.93[YRI][hapmap] |
rs12090389 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs12164500 | 0.83[YRI][hapmap] |
rs1251274 | 0.82[YRI][hapmap] |
rs1586936 | 0.88[AFR][1000 genomes] |
rs17097567 | 1.00[CEU][hapmap] |
rs17097696 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs17097707 | 1.00[CEU][hapmap];0.86[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs17097710 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs3795251 | 0.93[YRI][hapmap] |
rs5745309 | 1.00[CEU][hapmap];0.87[YRI][hapmap] |
rs5745392 | 0.82[YRI][hapmap] |
rs5745418 | 0.81[AFR][1000 genomes] |
rs5745496 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs5745516 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs5745542 | 0.94[YRI][hapmap] |
rs6692903 | 1.00[CEU][hapmap] |
rs7512465 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9970840 | 1.00[CEU][hapmap];0.87[YRI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1014072 | chr1:76200531-76460726 | Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
2 | nsv535005 | chr1:76200531-76460726 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
3 | nsv1004669 | chr1:76301198-76409451 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv998499 | chr1:76361784-76598712 | Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:76402800-76420000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |