Variant report

Variant	rs11161872
Chromosome Location	chr1:76376505-76376506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1021464	0.89[AFR][1000 genomes]
rs10465725	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11161915	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11162065	1.00[CEU][hapmap]
rs1144331	0.82[YRI][hapmap]
rs1144337	0.81[YRI][hapmap]
rs1144342	0.82[YRI][hapmap]
rs1146594	1.00[CEU][hapmap]
rs1146603	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs1146605	0.88[AMR][1000 genomes]
rs1146606	0.88[AMR][1000 genomes]
rs1146608	0.88[AMR][1000 genomes]
rs1146611	0.88[AMR][1000 genomes]
rs1146612	0.88[AMR][1000 genomes]
rs1146614	0.88[AMR][1000 genomes]
rs1146615	0.88[AMR][1000 genomes]
rs1146618	0.88[AMR][1000 genomes]
rs1146619	0.88[AMR][1000 genomes]
rs1146620	0.88[AMR][1000 genomes]
rs1146622	0.82[AMR][1000 genomes]
rs1146623	0.88[AMR][1000 genomes]
rs1146624	0.88[AMR][1000 genomes]
rs1146628	0.88[AMR][1000 genomes]
rs1146651	0.82[YRI][hapmap]
rs12074938	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12079065	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12079211	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12079950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081631	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12086506	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12089337	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs12090389	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12164500	0.83[YRI][hapmap]
rs1251274	0.82[YRI][hapmap]
rs13376397	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1586936	0.89[AFR][1000 genomes]
rs17097567	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17097696	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17097707	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17097710	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3795251	0.93[YRI][hapmap]
rs55977041	0.82[EUR][1000 genomes]
rs56322662	0.82[EUR][1000 genomes]
rs57443433	0.82[EUR][1000 genomes]
rs5745309	1.00[CEU][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5745392	0.82[YRI][hapmap]
rs5745418	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5745496	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs5745516	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs5745542	0.94[YRI][hapmap]
rs57798497	0.82[EUR][1000 genomes]
rs58125729	0.82[EUR][1000 genomes]
rs59723961	0.82[EUR][1000 genomes]
rs59932454	0.82[EUR][1000 genomes]
rs61612438	0.82[EUR][1000 genomes]
rs6692903	1.00[CEU][hapmap]
rs74090716	0.82[EUR][1000 genomes]
rs74090717	0.82[EUR][1000 genomes]
rs74090720	0.82[EUR][1000 genomes]
rs74090724	0.82[EUR][1000 genomes]
rs74090726	0.82[EUR][1000 genomes]
rs74090729	0.82[EUR][1000 genomes]
rs74090734	0.82[EUR][1000 genomes]
rs74090737	0.82[EUR][1000 genomes]
rs74090744	0.82[EUR][1000 genomes]
rs7512465	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9970840	1.00[CEU][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1795237	chr1:76268573-76383565	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv1800125	chr1:76269439-76379497	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1799260	chr1:76269439-76383297	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1847721	chr1:76269439-76383565	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1004669	chr1:76301198-76409451	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv871671	chr1:76304215-76391646	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv1850335	chr1:76344705-76379497	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76375800-76378000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links