Variant report

Variant	rs12079065
Chromosome Location	chr1:76298025-76298026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10465725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11161872	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1144329	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1144331	0.86[AFR][1000 genomes]
rs1144333	0.86[AFR][1000 genomes]
rs1144337	0.86[AFR][1000 genomes]
rs1144339	0.86[AFR][1000 genomes]
rs1144341	0.86[AFR][1000 genomes]
rs1144342	0.86[AFR][1000 genomes]
rs1146603	0.92[EUR][1000 genomes]
rs1146605	0.92[EUR][1000 genomes]
rs1146606	0.92[EUR][1000 genomes]
rs1146608	0.92[EUR][1000 genomes]
rs1146611	0.92[EUR][1000 genomes]
rs1146612	0.92[EUR][1000 genomes]
rs1146614	0.92[EUR][1000 genomes]
rs1146615	0.92[EUR][1000 genomes]
rs1146618	0.92[EUR][1000 genomes]
rs1146619	0.92[EUR][1000 genomes]
rs1146620	0.92[EUR][1000 genomes]
rs1146622	0.92[EUR][1000 genomes]
rs1146624	0.92[EUR][1000 genomes]
rs1146628	0.92[EUR][1000 genomes]
rs1146629	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1146641	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1146651	0.86[AFR][1000 genomes]
rs12074938	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079211	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079950	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12081631	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093817	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12094698	0.92[EUR][1000 genomes]
rs1251273	0.86[AFR][1000 genomes]
rs1251274	0.86[AFR][1000 genomes]
rs13376397	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17097567	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17097707	0.82[EUR][1000 genomes]
rs17097710	1.00[EUR][1000 genomes]
rs55781251	0.91[EUR][1000 genomes]
rs55977041	1.00[EUR][1000 genomes]
rs56322662	1.00[EUR][1000 genomes]
rs56364153	0.91[EUR][1000 genomes]
rs57443433	1.00[EUR][1000 genomes]
rs5745309	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5745392	0.86[AFR][1000 genomes]
rs5745418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57798497	1.00[EUR][1000 genomes]
rs58125729	1.00[EUR][1000 genomes]
rs59723961	1.00[EUR][1000 genomes]
rs59932454	1.00[EUR][1000 genomes]
rs60219146	0.91[EUR][1000 genomes]
rs61124994	0.84[EUR][1000 genomes]
rs61612438	1.00[EUR][1000 genomes]
rs74088996	0.91[EUR][1000 genomes]
rs74088997	0.91[EUR][1000 genomes]
rs74088999	0.91[EUR][1000 genomes]
rs74090705	0.91[EUR][1000 genomes]
rs74090716	1.00[EUR][1000 genomes]
rs74090717	1.00[EUR][1000 genomes]
rs74090720	1.00[EUR][1000 genomes]
rs74090724	1.00[EUR][1000 genomes]
rs74090726	1.00[EUR][1000 genomes]
rs74090729	1.00[EUR][1000 genomes]
rs74090734	1.00[EUR][1000 genomes]
rs74090737	1.00[EUR][1000 genomes]
rs74090744	1.00[EUR][1000 genomes]
rs7512465	1.00[EUR][1000 genomes]
rs7544911	0.84[EUR][1000 genomes]
rs815310	0.82[EUR][1000 genomes]
rs815311	0.82[EUR][1000 genomes]
rs9970840	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1795237	chr1:76268573-76383565	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1800125	chr1:76269439-76379497	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1799260	chr1:76269439-76383297	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1847721	chr1:76269439-76383565	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1466	chr1:76280957-76299478	ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76295800-76307800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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