Variant report
Variant | rs1144341 |
---|---|
Chromosome Location | chr1:76282659-76282660 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs1021464 | 0.86[EUR][1000 genomes] |
rs10873724 | 0.94[ASN][1000 genomes] |
rs10873727 | 0.95[ASN][1000 genomes] |
rs10873728 | 0.95[ASN][1000 genomes] |
rs10873735 | 0.87[ASN][1000 genomes] |
rs10873738 | 0.95[ASN][1000 genomes] |
rs10873739 | 0.95[ASN][1000 genomes] |
rs1093006 | 0.83[ASN][1000 genomes] |
rs1093009 | 0.83[ASN][1000 genomes] |
rs11161600 | 0.82[ASN][1000 genomes] |
rs11161605 | 0.80[ASN][1000 genomes] |
rs11161700 | 0.95[ASN][1000 genomes] |
rs11161704 | 1.00[ASN][1000 genomes] |
rs11161790 | 0.86[ASN][1000 genomes] |
rs11161795 | 0.86[ASN][1000 genomes] |
rs1144328 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1144331 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1144333 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1144337 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1144338 | 0.95[ASN][1000 genomes] |
rs1144339 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1144342 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1146572 | 0.84[ASN][1000 genomes] |
rs1146592 | 0.88[ASN][1000 genomes] |
rs1146593 | 0.89[ASN][1000 genomes] |
rs1146602 | 0.93[ASN][1000 genomes] |
rs1146613 | 0.87[ASN][1000 genomes] |
rs1146616 | 0.95[ASN][1000 genomes] |
rs1146625 | 0.90[ASN][1000 genomes] |
rs1146645 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1146647 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1146648 | 0.95[ASN][1000 genomes] |
rs1146649 | 0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1146651 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1146652 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1146656 | 0.95[ASN][1000 genomes] |
rs11579355 | 0.95[ASN][1000 genomes] |
rs12024086 | 0.86[ASN][1000 genomes] |
rs12074938 | 0.91[AFR][1000 genomes] |
rs12076093 | 0.95[ASN][1000 genomes] |
rs12078151 | 0.95[ASN][1000 genomes] |
rs12079065 | 0.86[AFR][1000 genomes] |
rs12079211 | 0.91[AFR][1000 genomes] |
rs12081631 | 0.87[AFR][1000 genomes] |
rs12081710 | 0.95[ASN][1000 genomes] |
rs12090712 | 0.95[ASN][1000 genomes] |
rs12385715 | 0.95[ASN][1000 genomes] |
rs12401729 | 0.96[ASN][1000 genomes] |
rs12403889 | 0.96[ASN][1000 genomes] |
rs12405178 | 0.95[ASN][1000 genomes] |
rs1250875 | 0.84[ASN][1000 genomes] |
rs1250877 | 0.84[ASN][1000 genomes] |
rs1250878 | 0.84[ASN][1000 genomes] |
rs1250881 | 0.90[ASN][1000 genomes] |
rs1250882 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1251065 | 0.84[ASN][1000 genomes] |
rs1251077 | 0.81[ASN][1000 genomes] |
rs1251078 | 0.83[ASN][1000 genomes] |
rs1251079 | 0.83[ASN][1000 genomes] |
rs1251270 | 1.00[ASN][1000 genomes] |
rs1251272 | 0.95[ASN][1000 genomes] |
rs1251273 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1251274 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1251275 | 0.95[ASN][1000 genomes] |
rs12703 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12728962 | 0.82[ASN][1000 genomes] |
rs12748900 | 0.80[ASN][1000 genomes] |
rs12756349 | 0.82[ASN][1000 genomes] |
rs12757213 | 0.81[ASN][1000 genomes] |
rs1323734 | 0.83[ASN][1000 genomes] |
rs13376397 | 0.86[AFR][1000 genomes] |
rs1586936 | 0.86[EUR][1000 genomes] |
rs1621198 | 0.83[ASN][1000 genomes] |
rs1631498 | 0.85[ASN][1000 genomes] |
rs17097567 | 0.94[AFR][1000 genomes] |
rs1767459 | 0.86[ASN][1000 genomes] |
rs1770513 | 0.87[ASN][1000 genomes] |
rs1812589 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1960528 | 0.83[ASN][1000 genomes] |
rs2012536 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2788655 | 0.83[ASN][1000 genomes] |
rs34045364 | 0.95[ASN][1000 genomes] |
rs34177389 | 0.95[ASN][1000 genomes] |
rs35591768 | 0.95[ASN][1000 genomes] |
rs36054685 | 0.92[ASN][1000 genomes] |
rs3765682 | 0.83[ASN][1000 genomes] |
rs4347163 | 0.83[ASN][1000 genomes] |
rs4949884 | 0.95[ASN][1000 genomes] |
rs5019550 | 0.95[ASN][1000 genomes] |
rs56350137 | 0.95[ASN][1000 genomes] |
rs5745309 | 0.91[AFR][1000 genomes] |
rs5745327 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs5745343 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs5745353 | 0.83[ASN][1000 genomes] |
rs5745354 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs5745392 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61676733 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs696677 | 0.82[ASN][1000 genomes] |
rs696679 | 0.83[ASN][1000 genomes] |
rs699677 | 0.83[ASN][1000 genomes] |
rs699683 | 0.85[ASN][1000 genomes] |
rs699824 | 0.83[ASN][1000 genomes] |
rs699825 | 0.83[ASN][1000 genomes] |
rs7514912 | 0.95[ASN][1000 genomes] |
rs7548391 | 0.95[ASN][1000 genomes] |
rs814851 | 0.83[ASN][1000 genomes] |
rs814855 | 0.83[ASN][1000 genomes] |
rs814873 | 0.80[ASN][1000 genomes] |
rs814874 | 0.80[ASN][1000 genomes] |
rs815309 | 0.85[ASN][1000 genomes] |
rs9970840 | 0.91[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv519329 | chr1:75830438-76358591 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
2 | nsv1014072 | chr1:76200531-76460726 | Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
3 | nsv535005 | chr1:76200531-76460726 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
4 | esv1795237 | chr1:76268573-76383565 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
5 | esv1800125 | chr1:76269439-76379497 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
6 | esv1799260 | chr1:76269439-76383297 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
7 | esv1847721 | chr1:76269439-76383565 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
8 | nsv1466 | chr1:76280957-76299478 | ZNF genes & repeats Weak transcription Enhancers Strong transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:76262400-76282800 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
2 | chr1:76262600-76288800 | Weak transcription | Brain Substantia Nigra | brain |
3 | chr1:76262600-76294600 | Weak transcription | Primary B cells from cord blood | blood |
4 | chr1:76263000-76287400 | Weak transcription | Aorta | Aorta |
5 | chr1:76263000-76289000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
6 | chr1:76263000-76296200 | Weak transcription | Ovary | ovary |
7 | chr1:76263400-76289000 | Weak transcription | Brain Hippocampus Middle | brain |
8 | chr1:76263600-76284000 | Weak transcription | Primary T helper naive cells fromperipheralblood | blood |
9 | chr1:76264200-76291400 | Weak transcription | Psoas Muscle | Psoas |
10 | chr1:76264600-76288600 | Weak transcription | Left Ventricle | heart |
11 | chr1:76264800-76288600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
12 | chr1:76264800-76288600 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
13 | chr1:76279600-76288600 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
14 | chr1:76282200-76295200 | Weak transcription | Right Ventricle | heart |