The 2.0 version of rSNPBase

Variant report

Variant rs1250877
Chromosome Location chr1:76193494-76193495
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:76189800-76194200 Active TSS GM12878-XiMat blood
2 chr1:76190800-76199400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr1:76190800-76207200 Weak transcription Spleen Spleen
4 chr1:76190800-76208000 Weak transcription Gastric stomach
5 chr1:76191000-76199000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr1:76191200-76193800 Enhancers Primary T helper naive cells fromperipheralblood blood
7 chr1:76191200-76197600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr1:76191200-76219600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr1:76191400-76194000 Enhancers Primary T helper cells fromperipheralblood blood
10 chr1:76191400-76199200 Weak transcription Placenta Amnion Placenta Amnion
11 chr1:76191400-76199400 Weak transcription Aorta Aorta
12 chr1:76191800-76195800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr1:76191800-76208000 Weak transcription A549 lung
14 chr1:76191800-76208200 Weak transcription Brain Substantia Nigra brain
15 chr1:76191800-76209400 Weak transcription Primary T killer memory cells from peripheral blood blood
16 chr1:76192000-76193600 Weak transcription Esophagus oesophagus
17 chr1:76192000-76193800 Enhancers Fetal Brain Female brain
18 chr1:76192000-76193800 Enhancers Psoas Muscle Psoas
19 chr1:76192000-76195200 Weak transcription Fetal Stomach stomach
20 chr1:76192000-76195800 Weak transcription Left Ventricle heart
21 chr1:76192000-76196200 Weak transcription Fetal Thymus thymus
22 chr1:76192000-76196400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr1:76192000-76197400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr1:76192000-76198600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr1:76192000-76198600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr1:76192000-76198600 Weak transcription HSMMtube muscle
27 chr1:76192000-76199400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:76192000-76199400 Weak transcription Lung lung
29 chr1:76192000-76208000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr1:76192000-76210200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
31 chr1:76192000-76220400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:76192000-76220600 Weak transcription ES-WA7 Cell Line embryonic stem cell
33 chr1:76192000-76227800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
34 chr1:76192200-76193800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr1:76192200-76198200 Weak transcription Fetal Intestine Large intestine
36 chr1:76192200-76198400 Weak transcription Primary T cells fromperipheralblood blood
37 chr1:76192200-76198800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr1:76192200-76199200 Weak transcription Brain Hippocampus Middle brain
39 chr1:76192200-76200000 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr1:76192200-76200200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
41 chr1:76192200-76200400 Weak transcription Placenta Placenta
42 chr1:76192200-76204600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr1:76192200-76217800 Weak transcription Fetal Brain Male brain
44 chr1:76192200-76222000 Weak transcription Primary T killer naive cells fromperipheralblood blood
45 chr1:76192400-76193600 Enhancers iPS-15b Cell Line embryonic stem cell
46 chr1:76192400-76193600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr1:76192400-76193800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr1:76192400-76193800 Enhancers Primary B cells from peripheral blood blood
49 chr1:76192400-76193800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr1:76192400-76193800 Enhancers Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015