Variant report

Variant	rs814897
Chromosome Location	chr1:76154273-76154274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76153507..76155716-chr1:76158535..76161147,2	K562	blood:
2	chr1:76152720..76155791-chr1:76253617..76257786,3	K562	blood:

Variant related genes	Relation type
ENSG00000201487	Chromatin interaction
ENSG00000137955	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1093006	0.88[ASN][1000 genomes]
rs1093009	0.88[ASN][1000 genomes]
rs11161439	0.84[ASN][1000 genomes]
rs11161465	0.84[ASN][1000 genomes]
rs11164035	0.84[ASN][1000 genomes]
rs11164037	0.84[ASN][1000 genomes]
rs1146572	0.83[ASN][1000 genomes]
rs1146587	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1146592	0.82[ASN][1000 genomes]
rs1146593	0.80[ASN][1000 genomes]
rs12022011	0.82[ASN][1000 genomes]
rs12027620	0.80[ASN][1000 genomes]
rs12034697	0.84[ASN][1000 genomes]
rs12045299	0.87[ASN][1000 genomes]
rs12404553	0.84[ASN][1000 genomes]
rs1250875	0.83[ASN][1000 genomes]
rs1250876	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1250877	0.83[ASN][1000 genomes]
rs1250878	0.83[ASN][1000 genomes]
rs1250880	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1251065	0.83[ASN][1000 genomes]
rs12563737	0.82[ASN][1000 genomes]
rs12747967	0.84[ASN][1000 genomes]
rs1323734	0.88[ASN][1000 genomes]
rs1391518	0.84[ASN][1000 genomes]
rs1391520	0.84[ASN][1000 genomes]
rs1535740	0.84[ASN][1000 genomes]
rs1591120	0.84[ASN][1000 genomes]
rs1621198	0.88[ASN][1000 genomes]
rs1694421	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1767457	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1826978	0.81[ASN][1000 genomes]
rs1960528	0.88[ASN][1000 genomes]
rs35837767	0.84[ASN][1000 genomes]
rs6668963	0.82[ASN][1000 genomes]
rs6676182	0.82[ASN][1000 genomes]
rs6695055	0.82[ASN][1000 genomes]
rs67108483	0.84[ASN][1000 genomes]
rs696677	0.86[ASN][1000 genomes]
rs696679	0.88[ASN][1000 genomes]
rs699677	0.88[ASN][1000 genomes]
rs699683	0.85[ASN][1000 genomes]
rs699824	0.88[ASN][1000 genomes]
rs699825	0.88[ASN][1000 genomes]
rs7417486	0.84[ASN][1000 genomes]
rs7516477	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7548695	0.82[ASN][1000 genomes]
rs7548991	0.81[ASN][1000 genomes]
rs814851	0.88[ASN][1000 genomes]
rs814855	0.88[ASN][1000 genomes]
rs814873	0.83[ASN][1000 genomes]
rs814874	0.83[ASN][1000 genomes]
rs815301	0.86[ASN][1000 genomes]
rs815303	0.83[ASN][1000 genomes]
rs815305	0.82[ASN][1000 genomes]
rs815309	0.85[ASN][1000 genomes]
rs9660848	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2757737	chr1:75986904-76187748	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2758943	chr1:75986904-76187748	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv427675	chr1:76070382-76187748	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2756846	chr1:76083408-76156986	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv870520	chr1:76088392-76206490	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv830281	chr1:76095292-76251053	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv945914	chr1:76109781-76172388	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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