Variant report

Variant	rs815303
Chromosome Location	chr1:76163665-76163666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76160863..76164413-chr1:76188361..76190736,3	K562	blood:

Variant related genes	Relation type
ENSG00000117054	Chromatin interaction
ENSG00000178193	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1093006	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1093009	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1093011	0.82[AMR][1000 genomes]
rs1146572	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1146577	0.86[ASN][1000 genomes]
rs1146592	0.88[ASN][1000 genomes]
rs1146593	0.87[ASN][1000 genomes]
rs1146602	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1146616	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1250875	0.89[ASN][1000 genomes]
rs1250876	0.80[ASN][1000 genomes]
rs1250877	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1250878	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1250880	0.81[ASN][1000 genomes]
rs1251065	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1251078	0.80[ASN][1000 genomes]
rs1251079	0.80[ASN][1000 genomes]
rs1323734	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1621198	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1631498	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1767459	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1770513	0.86[ASN][1000 genomes]
rs1960528	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs696677	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs696679	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs699677	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs699683	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs699824	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs699825	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7516477	0.81[ASN][1000 genomes]
rs814851	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs814855	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs814873	0.87[ASN][1000 genomes]
rs814874	0.87[ASN][1000 genomes]
rs814897	0.83[ASN][1000 genomes]
rs815309	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2757737	chr1:75986904-76187748	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2758943	chr1:75986904-76187748	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv427675	chr1:76070382-76187748	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv870520	chr1:76088392-76206490	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv830281	chr1:76095292-76251053	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv945914	chr1:76109781-76172388	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv871572	chr1:76161889-76208488	Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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