Variant report

Variant	rs11161465
Chromosome Location	chr1:76191744-76191745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr1:76191523-76191951	HepG2	liver:	n/a	n/a
2	CEBPB	chr1:76191600-76191877	HepG2	liver:	n/a	n/a
3	MAFK	chr1:76191558-76191905	HepG2	liver:	n/a	n/a
4	USF2	chr1:76191684-76191758	HepG2	liver:	n/a	n/a
5	SMC3	chr1:76191612-76191886	HepG2	liver:	n/a	n/a
6	STAT3	chr1:76191556-76191756	MCF10A-Er-Src	breast:	n/a	n/a
7	EP300	chr1:76191617-76191880	HepG2	liver:	n/a	n/a
8	EBF1	chr1:76191435-76192399	GM12878	blood:	n/a	chr1:76191974-76191985
9	MAX	chr1:76191629-76192030	K562	blood:	n/a	n/a
10	ZNF384	chr1:76191637-76192654	GM12878	blood:	n/a	chr1:76191781-76191789
11	MBD4	chr1:76191432-76192013	HepG2	liver:	n/a	n/a
12	ARID3A	chr1:76191179-76192020	HepG2	liver:	n/a	n/a
13	ZEB1	chr1:76191413-76191952	HepG2	liver:	n/a	n/a
14	USF1	chr1:76191641-76191852	HepG2	liver:	n/a	chr1:76191765-76191776
15	BRCA1	chr1:76191589-76191872	HepG2	liver:	n/a	n/a
16	REST	chr1:76191547-76191948	HepG2	liver:	n/a	n/a
17	MAFF	chr1:76191536-76191874	HepG2	liver:	n/a	n/a
18	MXI1	chr1:76191545-76191956	HepG2	liver:	n/a	n/a
19	MYC	chr1:76190245-76191801	MCF10A-Er-Src	breast:	n/a	n/a
20	POLR2A	chr1:76188739-76192883	GM12878	blood:	n/a	n/a
21	ZNF384	chr1:76189840-76192669	K562	blood:	n/a	chr1:76191781-76191789
22	UBTF	chr1:76191394-76191921	K562	blood:	n/a	n/a
23	MAX	chr1:76191662-76191971	HepG2	liver:	n/a	n/a
24	IRF1	chr1:76189245-76193364	K562	blood:	n/a	chr1:76189864-76189877 chr1:76190686-76190700 chr1:76190686-76190696 chr1:76192789-76192803 chr1:76190682-76190696 chr1:76192789-76192800 chr1:76190680-76190697 chr1:76190381-76190395 chr1:76189864-76189878 chr1:76189864-76189876 chr1:76190001-76190015 chr1:76190685-76190696 chr1:76192789-76192802 chr1:76190176-76190187 chr1:76193209-76193221 chr1:76192989-76193000 chr1:76192790-76192800 chr1:76189863-76189874 chr1:76189864-76189877 chr1:76191327-76191339 chr1:76192789-76192802 chr1:76192790-76192804 chr1:76192989-76193003 chr1:76190684-76190704 chr1:76192789-76192802 chr1:76189859-76189876
25	MAFK	chr1:76191563-76191907	HepG2	liver:	n/a	n/a
26	CEBPB	chr1:76190999-76191836	Hela-S3	cervix:	n/a	chr1:76191248-76191261
27	POLR2A	chr1:76191370-76192052	GM12878	blood:	n/a	n/a
28	MAFK	chr1:76191087-76191814	Hela-S3	cervix:	n/a	n/a
29	HNF4A	chr1:76191405-76191976	HepG2	liver:	n/a	chr1:76191724-76191738 chr1:76191732-76191744 chr1:76191725-76191738 chr1:76191730-76191745 chr1:76191724-76191738
30	MAX	chr1:76191581-76191943	K562	blood:	n/a	n/a
31	HNF4A	chr1:76191557-76191963	HepG2	liver:	n/a	chr1:76191724-76191738 chr1:76191732-76191744 chr1:76191725-76191738 chr1:76191730-76191745 chr1:76191724-76191738
32	BHLHE40	chr1:76191570-76191855	HepG2	liver:	n/a	n/a
33	USF1	chr1:76191613-76191874	HepG2	liver:	n/a	chr1:76191765-76191776
34	POLR2A	chr1:76188418-76192901	GM12891	blood:	n/a	n/a
35	FOXA1	chr1:76191543-76191925	HepG2	liver:	n/a	n/a
36	POLR2A	chr1:76191440-76191760	HepG2	liver:	n/a	n/a
37	RUNX3	chr1:76191360-76191823	GM12878	blood:	n/a	n/a
38	EP300	chr1:76191564-76191806	GM12878	blood:	n/a	n/a
39	FOXA2	chr1:76191520-76191900	HepG2	liver:	n/a	n/a
40	IRF1	chr1:76189162-76192393	K562	blood:	n/a	chr1:76189864-76189877 chr1:76190686-76190700 chr1:76190686-76190696 chr1:76190682-76190696 chr1:76190680-76190697 chr1:76190381-76190395 chr1:76189864-76189878 chr1:76189864-76189876 chr1:76190001-76190015 chr1:76190685-76190696 chr1:76190176-76190187 chr1:76189863-76189874 chr1:76189864-76189877 chr1:76191327-76191339 chr1:76190684-76190704 chr1:76189859-76189876
41	MAX	chr1:76191492-76192074	HepG2	liver:	n/a	n/a
42	MYBL2	chr1:76191400-76192207	HepG2	liver:	n/a	n/a
43	TBP	chr1:76191493-76191856	HepG2	liver:	n/a	n/a
44	HEY1	chr1:76191430-76191937	HepG2	liver:	n/a	n/a
45	NFIC	chr1:76191490-76191950	HepG2	liver:	n/a	n/a
46	MYBL2	chr1:76191469-76192060	HepG2	liver:	n/a	n/a
47	BHLHE40	chr1:76191237-76191985	GM12878	blood:	n/a	n/a
48	MXI1	chr1:76189073-76192452	SK-N-SH	brain:	n/a	n/a
49	JUND	chr1:76191556-76191920	HepG2	liver:	n/a	n/a
50	RCOR1	chr1:76191608-76191945	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:76188658..76192178-chr1:76249968..76253902,5	MCF-7	breast:
2	chr1:76187424..76195796-chr1:76248839..76258922,52	K562	blood:
3	chr1:76190900..76193069-chr1:76204976..76207416,2	K562	blood:
4	chr1:76190185..76192141-chr1:76251658..76253401,2	MCF-7	breast:
5	chr1:76190052..76193339-chr1:76196508..76198872,3	K562	blood:
6	chr1:76188764..76194417-chr1:76259356..76264333,14	K562	blood:
7	chr1:76189028..76194220-chr1:76209012..76215464,6	K562	blood:
8	chr1:76186306..76195796-chr1:76248732..76266552,73	K562	blood:

Variant related genes	Relation type
ENSG00000178193	TF binding region
ENSG00000201487	Chromatin interaction
ENSG00000181227	Chromatin interaction
ENSG00000117054	Chromatin interaction
ENSG00000057468	Chromatin interaction
ENSG00000207241	Chromatin interaction
ENSG00000206620	Chromatin interaction
ENSG00000137955	Chromatin interaction

Extended variants
information (count: 141 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs1021462	0.86[CHB][hapmap]
rs10782556	0.84[ASN][1000 genomes]
rs10873738	0.90[JPT][hapmap]
rs11161439	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11161447	0.91[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs11161600	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11161602	0.91[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.86[ASN][1000 genomes]
rs11161605	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11161731	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs11161852	0.91[CHB][hapmap]
rs11161887	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs11164015	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11164035	0.88[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11164037	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1144328	0.81[JPT][hapmap]
rs1144331	0.81[JPT][hapmap]
rs1144333	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1144337	0.81[JPT][hapmap]
rs1144342	0.81[JPT][hapmap]
rs1146587	0.87[ASN][1000 genomes]
rs1146647	0.81[JPT][hapmap]
rs1146648	0.86[JPT][hapmap]
rs1146649	0.81[JPT][hapmap]
rs1146651	0.85[JPT][hapmap]
rs1146652	0.81[JPT][hapmap]
rs12021750	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs12022011	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12024645	0.91[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs12027620	0.82[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs12031600	0.83[ASN][1000 genomes]
rs12032051	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12033058	0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12033059	0.84[ASN][1000 genomes]
rs12034697	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12044025	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12045299	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12045363	0.84[ASN][1000 genomes]
rs12049212	0.83[ASN][1000 genomes]
rs12076093	0.86[JPT][hapmap]
rs12090712	0.85[JPT][hapmap]
rs12401729	0.82[CHB][hapmap]
rs12404553	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12407107	0.91[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12409592	0.91[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs1250876	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1250880	0.82[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1251077	0.90[ASN][1000 genomes]
rs1251078	0.82[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs1251079	0.82[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs1251272	0.84[JPT][hapmap]
rs1251274	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12563737	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12564772	0.84[ASN][1000 genomes]
rs12567390	0.84[CHB][hapmap]
rs12703	0.81[JPT][hapmap]
rs12724860	0.80[ASN][1000 genomes]
rs12728962	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12732722	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12736447	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12744608	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12745456	0.91[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.80[TSI][hapmap];0.83[ASN][1000 genomes]
rs12747967	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12755811	0.84[ASN][1000 genomes]
rs12756349	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12757213	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12757866	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1303870	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1391518	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1391520	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1463812	0.86[CEU][hapmap];0.82[TSI][hapmap]
rs1498313	0.86[JPT][hapmap]
rs1535740	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1591120	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1603734	0.86[JPT][hapmap]
rs1694428	0.90[JPT][hapmap]
rs17097634	0.84[ASN][1000 genomes]
rs17097681	0.82[CHB][hapmap]
rs17649675	0.82[CHB][hapmap]
rs1767457	0.85[ASN][1000 genomes]
rs1770513	0.90[JPT][hapmap]
rs1826978	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1908089	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs211713	0.90[CEU][hapmap]
rs211719	0.90[CEU][hapmap]
rs2131558	0.84[ASN][1000 genomes]
rs2307077	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2788655	0.83[ASN][1000 genomes]
rs34486572	0.84[ASN][1000 genomes]
rs35290302	0.91[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs35837767	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3737574	0.91[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs3765682	0.82[CHB][hapmap]
rs3819949	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs5745314	0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs5745327	0.81[JPT][hapmap]
rs5745334	0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs5745343	0.81[JPT][hapmap]
rs5745353	0.88[ASN][1000 genomes]
rs5745392	0.81[JPT][hapmap]
rs5745426	0.82[ASN][1000 genomes]
rs5745429	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs5745448	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs5745451	0.81[JPT][hapmap]
rs5745464	0.81[CHB][hapmap]
rs5745465	0.82[CHB][hapmap]
rs5745523	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs5745532	0.90[CHB][hapmap]
rs5745542	0.82[CHB][hapmap]
rs5745546	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs58552356	0.82[ASN][1000 genomes]
rs6665431	0.87[ASN][1000 genomes]
rs6668963	0.87[ASN][1000 genomes]
rs6676182	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6680389	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6687882	0.91[CHB][hapmap]
rs6695055	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67108483	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs696679	0.86[JPT][hapmap]
rs699683	0.86[JPT][hapmap]
rs699825	0.86[JPT][hapmap]
rs71502708	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7417486	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7514912	0.86[JPT][hapmap]
rs7516477	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7525919	0.91[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7545057	0.82[CHB][hapmap]
rs7548391	0.86[JPT][hapmap]
rs7548695	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7548991	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7552289	0.86[CEU][hapmap];0.82[TSI][hapmap]
rs814875	0.95[CEU][hapmap]
rs814876	0.90[CEU][hapmap]
rs814897	0.84[ASN][1000 genomes]
rs815301	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs815304	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs815305	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9660848	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv870520	chr1:76088392-76206490	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv830281	chr1:76095292-76251053	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv871572	chr1:76161889-76208488	Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11161465	MSH4	cis	parietal	SCAN
rs11161465	ACADM	cis	cerebellum	SCAN
rs11161465	ACADM	cis	parietal	SCAN
rs11161465	MSH4	cis	cerebellum	SCAN
rs11161465	RABGGTB	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76189200-76191800	Active TSS	Esophagus	oesophagus
2	chr1:76189200-76191800	Active TSS	HSMM	muscle
3	chr1:76189200-76192000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr1:76189200-76192400	Active TSS	HMEC	breast
5	chr1:76189200-76192400	Active TSS	NHDF-Ad	bronchial
6	chr1:76189400-76191800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:76189400-76191800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:76189400-76191800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:76189400-76191800	Active TSS	Fetal Stomach	stomach
10	chr1:76189400-76191800	Active TSS	Psoas Muscle	Psoas
11	chr1:76189400-76191800	Active TSS	Right Ventricle	heart
12	chr1:76189400-76192000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:76189400-76192000	Active TSS	HepG2	liver
14	chr1:76189400-76192000	Active TSS	NHLF	lung
15	chr1:76189400-76192200	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr1:76189400-76192200	Active TSS	Ovary	ovary
17	chr1:76189400-76192400	Active TSS	Colonic Mucosa	Colon
18	chr1:76189600-76191800	Active TSS	Left Ventricle	heart
19	chr1:76189600-76192000	Active TSS	H9 Cell Line	embryonic stem cell
20	chr1:76189600-76192000	Active TSS	Pancreas	Pancrea
21	chr1:76189600-76192000	Active TSS	Hela-S3	cervix
22	chr1:76189600-76192400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:76189800-76191800	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr1:76189800-76191800	Active TSS	Fetal Intestine Large	intestine
25	chr1:76189800-76192000	Active TSS	H1 Cell Line	embryonic stem cell
26	chr1:76189800-76192200	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr1:76189800-76192200	Active TSS	Stomach Smooth Muscle	stomach
28	chr1:76189800-76193400	Active TSS	K562	blood
29	chr1:76189800-76194200	Active TSS	GM12878-XiMat	blood
30	chr1:76190000-76192200	Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr1:76190800-76191800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr1:76190800-76192000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:76190800-76192400	Active TSS	Right Atrium	heart
34	chr1:76190800-76192600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:76190800-76199400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:76190800-76207200	Weak transcription	Spleen	Spleen
37	chr1:76190800-76208000	Weak transcription	Gastric	stomach
38	chr1:76191000-76191800	Weak transcription	Lung	lung
39	chr1:76191000-76191800	Flanking Active TSS	HUVEC	blood vessel
40	chr1:76191000-76191800	Flanking Active TSS	NH-A	brain
41	chr1:76191000-76192000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr1:76191000-76192400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr1:76191000-76192400	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr1:76191000-76192400	Flanking Active TSS	Liver	Liver
45	chr1:76191000-76199000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:76191200-76191800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr1:76191200-76191800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr1:76191200-76191800	Flanking Active TSS	Brain Hippocampus Middle	brain
49	chr1:76191200-76191800	Flanking Active TSS	Brain Substantia Nigra	brain
50	chr1:76191200-76191800	Flanking Active TSS	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links