Variant report

Variant	rs34486572
Chromosome Location	chr1:76298059-76298060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10782556	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873724	0.81[ASN][1000 genomes]
rs10873727	0.83[ASN][1000 genomes]
rs10873728	0.83[ASN][1000 genomes]
rs10873738	0.83[ASN][1000 genomes]
rs10873739	0.83[ASN][1000 genomes]
rs11161439	0.85[ASN][1000 genomes]
rs11161447	0.87[ASN][1000 genomes]
rs11161465	0.84[ASN][1000 genomes]
rs11161600	0.94[ASN][1000 genomes]
rs11161602	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11161605	0.92[ASN][1000 genomes]
rs11161700	0.83[ASN][1000 genomes]
rs11161790	0.86[ASN][1000 genomes]
rs11161795	0.86[ASN][1000 genomes]
rs11164035	0.85[ASN][1000 genomes]
rs11164037	0.85[ASN][1000 genomes]
rs1144338	0.83[ASN][1000 genomes]
rs1146648	0.82[ASN][1000 genomes]
rs1146656	0.83[ASN][1000 genomes]
rs11579355	0.82[ASN][1000 genomes]
rs12021750	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12022011	0.82[ASN][1000 genomes]
rs12024086	0.86[ASN][1000 genomes]
rs12024645	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024786	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12027620	0.89[ASN][1000 genomes]
rs12031600	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12032051	0.88[ASN][1000 genomes]
rs12033058	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12033059	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12044025	0.89[ASN][1000 genomes]
rs12045299	0.82[ASN][1000 genomes]
rs12045363	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12049212	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12076093	0.83[ASN][1000 genomes]
rs12078151	0.83[ASN][1000 genomes]
rs12081710	0.83[ASN][1000 genomes]
rs12090712	0.83[ASN][1000 genomes]
rs12385715	0.83[ASN][1000 genomes]
rs12405178	0.83[ASN][1000 genomes]
rs12407107	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251272	0.83[ASN][1000 genomes]
rs1251275	0.83[ASN][1000 genomes]
rs12563737	0.82[ASN][1000 genomes]
rs12564772	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724860	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12727156	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12728962	0.94[ASN][1000 genomes]
rs12744608	0.82[ASN][1000 genomes]
rs12745456	0.82[ASN][1000 genomes]
rs12747967	0.85[ASN][1000 genomes]
rs12755811	0.82[ASN][1000 genomes]
rs12756349	0.94[ASN][1000 genomes]
rs12757213	0.93[ASN][1000 genomes]
rs12757866	0.89[ASN][1000 genomes]
rs1391518	0.85[ASN][1000 genomes]
rs1391520	0.85[ASN][1000 genomes]
rs17097634	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1812589	0.81[ASN][1000 genomes]
rs1826978	0.89[ASN][1000 genomes]
rs2131558	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34045364	0.82[ASN][1000 genomes]
rs34177389	0.82[ASN][1000 genomes]
rs34984955	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35290302	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35591768	0.82[ASN][1000 genomes]
rs35837767	0.85[ASN][1000 genomes]
rs36054685	0.82[ASN][1000 genomes]
rs3737574	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4949884	0.83[ASN][1000 genomes]
rs5019550	0.83[ASN][1000 genomes]
rs56350137	0.83[ASN][1000 genomes]
rs5745314	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5745334	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5745353	0.96[ASN][1000 genomes]
rs5745426	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5745429	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58552356	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6668963	0.85[ASN][1000 genomes]
rs6676182	0.82[ASN][1000 genomes]
rs6680389	0.88[ASN][1000 genomes]
rs6695055	0.82[ASN][1000 genomes]
rs67108483	0.85[ASN][1000 genomes]
rs71656856	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7514912	0.82[ASN][1000 genomes]
rs7525919	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7548391	0.82[ASN][1000 genomes]
rs7548695	0.82[ASN][1000 genomes]
rs7548991	0.89[ASN][1000 genomes]
rs815301	0.84[ASN][1000 genomes]
rs815305	0.83[ASN][1000 genomes]
rs9660848	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1795237	chr1:76268573-76383565	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1800125	chr1:76269439-76379497	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1799260	chr1:76269439-76383297	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1847721	chr1:76269439-76383565	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1466	chr1:76280957-76299478	ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76295800-76307800	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links