Variant report

Variant	rs5745532
Chromosome Location	chr1:76362465-76362466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs1021462	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1021464	0.82[ASN][1000 genomes]
rs10732724	0.86[CHB][hapmap];0.96[JPT][hapmap]
rs10747330	0.94[YRI][hapmap]
rs10873738	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10873804	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11161447	1.00[CHB][hapmap]
rs11161465	0.90[CHB][hapmap]
rs11161602	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11161731	0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap]
rs11161785	0.94[YRI][hapmap]
rs11161852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11161887	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs1144328	0.81[CHB][hapmap]
rs1144331	0.82[CHB][hapmap]
rs1144332	0.94[YRI][hapmap]
rs1144333	0.80[CHB][hapmap]
rs1144337	0.81[CHB][hapmap]
rs1144342	0.82[CHB][hapmap]
rs1146633	0.94[YRI][hapmap]
rs1146647	0.80[CHB][hapmap]
rs1146648	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1146649	0.82[CHB][hapmap]
rs1146651	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1146652	0.82[CHB][hapmap]
rs12021750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap]
rs12022011	0.94[CHB][hapmap]
rs12022506	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12024645	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12027620	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12032051	1.00[CHB][hapmap]
rs12033058	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12044025	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs12044211	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12076093	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs12087636	0.91[ASN][1000 genomes]
rs12090712	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs12401729	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12407107	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12409592	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12410373	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1250876	0.85[CHB][hapmap]
rs1250880	0.85[CHB][hapmap]
rs1251078	0.86[CHB][hapmap]
rs1251079	0.85[CHB][hapmap]
rs1251272	0.86[CHB][hapmap]
rs12567390	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12703	0.82[CHB][hapmap]
rs12732495	0.91[JPT][hapmap]
rs12744608	0.89[CHB][hapmap]
rs1303870	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1469988	0.84[YRI][hapmap]
rs1498313	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1565718	0.88[YRI][hapmap]
rs1565719	0.94[YRI][hapmap]
rs1572859	0.84[EUR][1000 genomes]
rs1586936	0.82[ASN][1000 genomes]
rs1603734	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1658743	0.88[YRI][hapmap]
rs1658745	0.84[YRI][hapmap]
rs1689271	0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs17097681	0.82[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs17097695	0.87[JPT][hapmap]
rs17649675	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1770884	0.82[YRI][hapmap]
rs1770886	0.94[YRI][hapmap]
rs1770888	0.82[YRI][hapmap]
rs1770891	0.84[YRI][hapmap]
rs1796811	0.94[YRI][hapmap]
rs1796812	0.86[JPT][hapmap]
rs1908089	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs2028212	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2307077	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2347963	0.83[YRI][hapmap]
rs35290302	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs3737574	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs3765682	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs3795251	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3819949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs5745314	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs5745327	0.82[CHB][hapmap]
rs5745334	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs5745343	0.81[CHB][hapmap]
rs5745392	0.82[CHB][hapmap]
rs5745429	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs5745448	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs5745451	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs5745464	0.81[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs5745465	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs5745523	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs5745542	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs5745546	0.91[CHB][hapmap];0.96[JPT][hapmap]
rs6685657	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6687882	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs6693002	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6695055	0.95[CHB][hapmap]
rs7514912	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7516477	0.85[CHB][hapmap]
rs7520312	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7525919	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7545057	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7548391	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7548991	0.95[CHB][hapmap]
rs931506	0.83[JPT][hapmap]
rs9660848	0.95[CHB][hapmap]
rs995972	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1795237	chr1:76268573-76383565	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv1800125	chr1:76269439-76379497	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1799260	chr1:76269439-76383297	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1847721	chr1:76269439-76383565	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1004669	chr1:76301198-76409451	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv871671	chr1:76304215-76391646	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv1850335	chr1:76344705-76379497	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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