Variant report

Variant	rs61676733
Chromosome Location	chr1:76324961-76324962
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1021464	0.83[EUR][1000 genomes]
rs10465725	0.88[AFR][1000 genomes]
rs10873724	0.90[ASN][1000 genomes]
rs10873727	0.92[ASN][1000 genomes]
rs10873728	0.92[ASN][1000 genomes]
rs10873735	0.83[ASN][1000 genomes]
rs10873738	0.92[ASN][1000 genomes]
rs10873739	0.92[ASN][1000 genomes]
rs11161600	0.81[ASN][1000 genomes]
rs11161700	0.92[ASN][1000 genomes]
rs11161704	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11161790	0.90[ASN][1000 genomes]
rs11161795	0.90[ASN][1000 genomes]
rs1144328	0.95[ASN][1000 genomes]
rs1144331	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1144333	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1144337	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1144338	0.92[ASN][1000 genomes]
rs1144339	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1144341	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1144342	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1146572	0.80[ASN][1000 genomes]
rs1146592	0.84[ASN][1000 genomes]
rs1146593	0.86[ASN][1000 genomes]
rs1146602	0.89[ASN][1000 genomes]
rs1146613	0.83[ASN][1000 genomes]
rs1146616	0.91[ASN][1000 genomes]
rs1146625	0.86[ASN][1000 genomes]
rs1146645	0.95[ASN][1000 genomes]
rs1146647	0.95[ASN][1000 genomes]
rs1146648	0.91[ASN][1000 genomes]
rs1146649	0.95[ASN][1000 genomes]
rs1146651	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1146652	0.96[ASN][1000 genomes]
rs1146656	0.92[ASN][1000 genomes]
rs11579355	0.91[ASN][1000 genomes]
rs12021750	0.82[ASN][1000 genomes]
rs12024086	0.90[ASN][1000 genomes]
rs12031600	0.80[ASN][1000 genomes]
rs12049212	0.80[ASN][1000 genomes]
rs12076093	0.92[ASN][1000 genomes]
rs12078151	0.92[ASN][1000 genomes]
rs12081710	0.92[ASN][1000 genomes]
rs12090712	0.92[ASN][1000 genomes]
rs12385715	0.92[ASN][1000 genomes]
rs12401729	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12403889	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12405178	0.92[ASN][1000 genomes]
rs1250875	0.80[ASN][1000 genomes]
rs1250877	0.80[ASN][1000 genomes]
rs1250878	0.80[ASN][1000 genomes]
rs1250881	0.87[ASN][1000 genomes]
rs1250882	0.96[ASN][1000 genomes]
rs1251065	0.80[ASN][1000 genomes]
rs1251270	0.96[ASN][1000 genomes]
rs1251272	0.92[ASN][1000 genomes]
rs1251273	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1251274	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1251275	0.92[ASN][1000 genomes]
rs12703	0.95[ASN][1000 genomes]
rs12728962	0.81[ASN][1000 genomes]
rs12756349	0.81[ASN][1000 genomes]
rs12757213	0.80[ASN][1000 genomes]
rs1586936	0.83[EUR][1000 genomes]
rs1631498	0.81[ASN][1000 genomes]
rs1767459	0.83[ASN][1000 genomes]
rs1770513	0.83[ASN][1000 genomes]
rs1812589	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2012536	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34045364	0.91[ASN][1000 genomes]
rs34177389	0.91[ASN][1000 genomes]
rs35290302	0.80[ASN][1000 genomes]
rs35591768	0.91[ASN][1000 genomes]
rs36054685	0.95[ASN][1000 genomes]
rs3765682	0.87[ASN][1000 genomes]
rs4949884	0.92[ASN][1000 genomes]
rs5019550	0.92[ASN][1000 genomes]
rs56350137	0.92[ASN][1000 genomes]
rs5745327	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5745343	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5745353	0.82[ASN][1000 genomes]
rs5745354	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5745392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5745418	0.88[AFR][1000 genomes]
rs5745429	0.80[ASN][1000 genomes]
rs699683	0.81[ASN][1000 genomes]
rs7514912	0.91[ASN][1000 genomes]
rs7548391	0.91[ASN][1000 genomes]
rs815309	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1795237	chr1:76268573-76383565	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1800125	chr1:76269439-76379497	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1799260	chr1:76269439-76383297	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1847721	chr1:76269439-76383565	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1004669	chr1:76301198-76409451	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv871671	chr1:76304215-76391646	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76319600-76327400	Weak transcription	Aorta	Aorta

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