Variant report

Variant	rs12520638
Chromosome Location	chr5:164577418-164577419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10078215	0.98[ASN][1000 genomes]
rs10515891	0.98[ASN][1000 genomes]
rs11135353	0.98[ASN][1000 genomes]
rs11135354	0.98[ASN][1000 genomes]
rs12652343	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13162946	0.98[ASN][1000 genomes]
rs13183298	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1421701	0.98[ASN][1000 genomes]
rs1421713	0.98[ASN][1000 genomes]
rs28450493	0.83[ASN][1000 genomes]
rs34405444	0.98[ASN][1000 genomes]
rs4323250	0.93[ASN][1000 genomes]
rs4431365	0.93[ASN][1000 genomes]
rs4577712	0.92[ASN][1000 genomes]
rs6556809	0.96[ASN][1000 genomes]
rs6870031	0.98[ASN][1000 genomes]
rs6876275	0.98[ASN][1000 genomes]
rs6884200	0.89[ASN][1000 genomes]
rs6895570	0.98[ASN][1000 genomes]
rs7447491	0.96[ASN][1000 genomes]
rs766121	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7701554	0.98[ASN][1000 genomes]
rs7736590	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995060	chr5:163660200-164620500	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164571400-164578400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:164576000-164579600	Enhancers	Fetal Heart	heart
3	chr5:164576800-164578200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:164577000-164579000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:164577000-164579400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:164577400-164577800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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