Variant report
| Variant | rs13183298 |
|---|---|
| Chromosome Location | chr5:164529148-164529149 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10078215 | 0.85[ASN][1000 genomes] |
| rs1019444 | 0.91[ASN][1000 genomes] |
| rs10515891 | 0.84[ASN][1000 genomes] |
| rs11135347 | 0.95[ASN][1000 genomes] |
| rs11135353 | 0.84[ASN][1000 genomes] |
| rs11135354 | 0.84[ASN][1000 genomes] |
| rs12520638 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12652343 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13160815 | 0.93[ASN][1000 genomes] |
| rs13162946 | 0.85[ASN][1000 genomes] |
| rs1421678 | 0.91[ASN][1000 genomes] |
| rs1421701 | 0.84[ASN][1000 genomes] |
| rs1421713 | 0.84[ASN][1000 genomes] |
| rs17072571 | 0.91[ASN][1000 genomes] |
| rs28450493 | 0.81[ASN][1000 genomes] |
| rs34405444 | 0.84[ASN][1000 genomes] |
| rs4323250 | 0.90[ASN][1000 genomes] |
| rs4362959 | 0.91[ASN][1000 genomes] |
| rs4431365 | 0.90[ASN][1000 genomes] |
| rs4577712 | 0.89[ASN][1000 genomes] |
| rs4868916 | 0.81[AMR][1000 genomes] |
| rs4868917 | 0.84[AMR][1000 genomes] |
| rs6556809 | 0.83[ASN][1000 genomes] |
| rs6870031 | 0.84[ASN][1000 genomes] |
| rs6876275 | 0.84[ASN][1000 genomes] |
| rs6884200 | 0.93[ASN][1000 genomes] |
| rs6895570 | 0.84[ASN][1000 genomes] |
| rs7447491 | 0.83[ASN][1000 genomes] |
| rs766121 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7701554 | 0.84[ASN][1000 genomes] |
| rs7736590 | 0.83[ASN][1000 genomes] |
| rs969903 | 0.94[ASN][1000 genomes] |
| rs991328 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv995060 | chr5:163660200-164620500 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv528624 | chr5:164319435-164701201 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1033866 | chr5:164419608-164677758 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv883092 | chr5:164443094-164529549 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:164529000-164530000 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
