Variant report

Variant	rs13160815
Chromosome Location	chr5:164514881-164514882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10078215	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1019444	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10515891	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11135347	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11135353	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11135354	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12652343	0.93[ASN][1000 genomes]
rs13162946	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13183298	0.93[ASN][1000 genomes]
rs1421678	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1421701	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1421713	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17072571	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28450493	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34405444	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4323250	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4362959	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4431365	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4577712	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6556809	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6870031	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6876275	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6884200	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6895570	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7447491	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7701554	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7717921	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7736590	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs969903	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs991328	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995060	chr5:163660200-164620500	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv883092	chr5:164443094-164529549	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164512000-164515800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:164514000-164515400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:164514000-164516000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:164514200-164515600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links