Variant report

Variant	rs12521605
Chromosome Location	chr5:12325832-12325833
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:12312697..12314214-chr5:12323798..12325999,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10073092	0.83[EUR][1000 genomes]
rs12518866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13156281	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13157142	0.94[EUR][1000 genomes]
rs13158721	1.00[EUR][1000 genomes]
rs13166948	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13171780	1.00[EUR][1000 genomes]
rs13176562	1.00[EUR][1000 genomes]
rs13179328	1.00[EUR][1000 genomes]
rs13182154	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13184782	0.88[EUR][1000 genomes]
rs17789360	0.83[EUR][1000 genomes]
rs28719168	0.83[EUR][1000 genomes]
rs34149685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34207295	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34230260	1.00[EUR][1000 genomes]
rs34296320	1.00[EUR][1000 genomes]
rs34417774	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34732472	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34760286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34853457	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35158283	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35222184	0.93[AMR][1000 genomes]
rs35468069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35766462	0.94[EUR][1000 genomes]
rs35823289	0.89[EUR][1000 genomes]
rs66771452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66810576	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67049016	0.94[EUR][1000 genomes]
rs67287532	0.89[EUR][1000 genomes]
rs71601409	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71601413	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025096	chr5:12049731-12778382	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537660	chr5:12049731-12778382	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv880704	chr5:12132401-12338203	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv880364	chr5:12153033-12330841	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1030580	chr5:12254774-12364629	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1015676	chr5:12276531-12540904	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv427711	chr5:12285375-12747819	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1026529	chr5:12285675-12387812	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1017000	chr5:12285675-12451819	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv537664	chr5:12285675-12451819	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv917255	chr5:12310838-12929427	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:12322000-12330400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:12322800-12326800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:12324400-12327000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:12324800-12327000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:12325400-12326400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:12325400-12326800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:12325600-12326600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:12325800-12326800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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