Variant report

Variant	rs13156281
Chromosome Location	chr5:12243256-12243257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10073092	0.89[EUR][1000 genomes]
rs12518866	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12521605	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13155022	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13157142	0.89[EUR][1000 genomes]
rs13158721	0.94[EUR][1000 genomes]
rs13166948	0.94[EUR][1000 genomes]
rs13171780	0.94[EUR][1000 genomes]
rs13176562	0.94[EUR][1000 genomes]
rs13179328	0.94[EUR][1000 genomes]
rs13182154	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13184782	0.94[EUR][1000 genomes]
rs13187819	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17789360	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28719168	0.89[EUR][1000 genomes]
rs34120980	0.86[AMR][1000 genomes]
rs34149685	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34207295	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34230260	0.94[EUR][1000 genomes]
rs34296320	0.94[EUR][1000 genomes]
rs34417774	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34732472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34760286	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34853457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35122577	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35158283	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35222184	0.86[AMR][1000 genomes]
rs35468069	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35766462	0.89[EUR][1000 genomes]
rs35823289	0.95[EUR][1000 genomes]
rs56037496	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66771452	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66810576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67049016	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67287532	0.95[EUR][1000 genomes]
rs71601409	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71601413	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597155	chr5:12022698-12251916	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1016098	chr5:12042741-12310988	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1025096	chr5:12049731-12778382	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv537660	chr5:12049731-12778382	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv470989	chr5:12110214-12288541	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv880440	chr5:12128980-12288541	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv880704	chr5:12132401-12338203	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv881603	chr5:12153033-12288541	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv880364	chr5:12153033-12330841	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1024189	chr5:12162849-12258950	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv537663	chr5:12162849-12258950	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1030593	chr5:12183469-12250607	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1023330	chr5:12217960-12285735	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1031406	chr5:12231297-12305842	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:12242800-12243400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:12242800-12243800	Enhancers	NH-A	brain
3	chr5:12243000-12243600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:12243200-12243400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr5:12243200-12243800	Enhancers	HMEC	breast

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