Variant report

Variant	rs12521860
Chromosome Location	chr5:35814105-35814106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13436632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494572	0.96[CEU][hapmap];0.80[JPT][hapmap];0.98[EUR][1000 genomes]
rs1494574	0.98[EUR][1000 genomes]
rs1961426	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4869485	0.98[EUR][1000 genomes]
rs4869672	0.82[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6451229	0.88[CEU][hapmap]
rs6882117	0.86[JPT][hapmap]
rs716302	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs7736291	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs903388	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs903389	0.96[CEU][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs991570	0.96[CEU][hapmap];0.81[JPT][hapmap];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35806600-35816800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:35808800-35814600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr5:35808800-35817200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:35808800-35822400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr5:35809200-35814400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr5:35809200-35815600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr5:35811000-35814600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:35811000-35815400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr5:35811200-35815400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:35811200-35815600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr5:35811200-35817400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr5:35811600-35816800	Enhancers	Primary T cells from cord blood	blood
13	chr5:35811800-35814200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr5:35812400-35815600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:35812400-35815800	Weak transcription	Fetal Thymus	thymus
16	chr5:35812400-35816600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr5:35812600-35817000	Weak transcription	Dnd41	blood
18	chr5:35812600-35817400	Weak transcription	Thymus	Thymus
19	chr5:35813400-35814200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:35813800-35815200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr5:35814000-35814800	Weak transcription	NHLF	lung

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