Variant report

Variant	rs716302
Chromosome Location	chr5:35810268-35810269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12153578	0.94[JPT][hapmap]
rs12521860	0.96[CEU][hapmap]
rs13436632	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs1494572	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1494574	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1961426	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4869485	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869672	0.82[EUR][1000 genomes]
rs6451229	0.84[CEU][hapmap]
rs6451234	0.87[JPT][hapmap]
rs7736291	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs903388	0.92[CEU][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes]
rs903389	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs991570	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35803800-35810600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr5:35803800-35813800	Weak transcription	Left Ventricle	heart
3	chr5:35806600-35816800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:35808000-35810400	Weak transcription	Fetal Thymus	thymus
5	chr5:35808200-35810600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:35808800-35810600	Enhancers	Primary T cells from cord blood	blood
7	chr5:35808800-35810600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:35808800-35810600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:35808800-35814600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr5:35808800-35817200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:35808800-35822400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr5:35809200-35814400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr5:35809200-35815600	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr5:35809400-35813800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr5:35809800-35812600	Enhancers	Thymus	Thymus
16	chr5:35809800-35812600	Enhancers	Dnd41	blood
17	chr5:35810000-35810600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr5:35810000-35810600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr5:35810000-35811800	Enhancers	Hela-S3	cervix
20	chr5:35810200-35810600	Enhancers	Primary T helper cells PMA-I stimulated	--

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