Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35849089..35851096-chr5:35897625..35900411,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10077384	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1010600	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522083	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445897	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1445898	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1445899	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1494572	0.93[JPT][hapmap]
rs2161552	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2303137	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34442743	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3866450	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4484457	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6451234	0.93[JPT][hapmap]
rs696734	0.83[AFR][1000 genomes]
rs716302	0.94[JPT][hapmap]
rs7381111	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7717955	1.00[YRI][hapmap]
rs7736291	0.94[JPT][hapmap]
rs860413	0.87[YRI][hapmap]
rs903388	0.87[JPT][hapmap]
rs9764921	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs991570	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35891400-35902400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:35893600-35899400	Enhancers	Dnd41	blood
3	chr5:35895200-35898600	Enhancers	Fetal Thymus	thymus
4	chr5:35897600-35898800	Weak transcription	Thymus	Thymus
5	chr5:35897600-35899200	Weak transcription	NHDF-Ad	bronchial
6	chr5:35897600-35899600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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