Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35918022..35920429-chr5:35920583..35922848,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10053847	0.90[JPT][hapmap]
rs10077384	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1010600	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11567754	0.81[JPT][hapmap]
rs12153578	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12522083	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13167136	0.81[JPT][hapmap]
rs1389834	0.90[JPT][hapmap]
rs1389835	0.81[JPT][hapmap]
rs1445897	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1445898	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1445899	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2161552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2303137	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34442743	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3822731	0.81[JPT][hapmap]
rs4484457	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4869492	0.81[JPT][hapmap]
rs6451229	1.00[JPT][hapmap]
rs6891095	0.81[JPT][hapmap]
rs7381111	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9292618	0.90[JPT][hapmap]
rs9764921	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv4794	chr5:35906690-35934205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35912400-35920000	Weak transcription	Thymus	Thymus
2	chr5:35915600-35924200	Weak transcription	Primary T cells from cord blood	blood
3	chr5:35918400-35920200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:35918600-35919600	Enhancers	Dnd41	blood
5	chr5:35918600-35920000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:35918600-35920400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:35918600-35920800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:35918800-35920000	Enhancers	Osteobl	bone
9	chr5:35918800-35920200	Enhancers	Hela-S3	cervix
10	chr5:35918800-35920200	Enhancers	HMEC	breast
11	chr5:35918800-35920200	Enhancers	HSMM	muscle
12	chr5:35918800-35920200	Enhancers	NHDF-Ad	bronchial
13	chr5:35919000-35919800	Enhancers	NHEK	skin
14	chr5:35919000-35920400	Enhancers	NHLF	lung

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