Variant report

Variant	rs12524471
Chromosome Location	chr6:121661201-121661202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121654494..121658196-chr6:121658584..121663246,8	K562	blood:
2	chr6:121653058..121658241-chr6:121659261..121663570,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146350	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10499105	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782210	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964400	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968501	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525057	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525337	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526158	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12526903	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527407	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527618	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527748	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529567	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529694	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12530424	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273757	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273759	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273760	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273766	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273772	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273774	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273775	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273776	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1314812	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1621008	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1697446	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083387	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083393	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083435	0.84[EUR][1000 genomes]
rs17083441	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173837	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173838	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34349558	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245508	0.82[EUR][1000 genomes]
rs4257888	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4483022	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4527742	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4543411	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4585603	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945681	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945682	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4946546	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946548	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946551	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946564	0.84[EUR][1000 genomes]
rs4946567	0.80[EUR][1000 genomes]
rs59480217	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569179	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569182	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569194	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907975	0.80[EUR][1000 genomes]
rs6912500	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916425	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916773	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933263	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6933489	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935039	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941332	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706860	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73524557	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73526655	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73526665	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762181	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762977	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs785401	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs785403	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs785404	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs810826	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs811484	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs813068	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375017	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385188	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385191	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121656200-121662000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:121660600-121661600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:121660800-121661400	Enhancers	Fetal Kidney	kidney
4	chr6:121660800-121661400	Enhancers	K562	blood

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