Variant report

Variant	rs4946564
Chromosome Location	chr6:121666467-121666468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10499102	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10499103	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10499105	0.83[EUR][1000 genomes]
rs10499107	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs10499108	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10499110	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs11964400	0.83[EUR][1000 genomes]
rs11968501	0.83[EUR][1000 genomes]
rs12524471	0.84[EUR][1000 genomes]
rs12525057	0.83[EUR][1000 genomes]
rs12526158	0.84[EUR][1000 genomes]
rs12526903	0.83[EUR][1000 genomes]
rs12527618	0.83[EUR][1000 genomes]
rs12527748	0.84[EUR][1000 genomes]
rs12530424	0.83[EUR][1000 genomes]
rs1273760	0.83[EUR][1000 genomes]
rs17083268	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17083302	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17083356	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs17083358	1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs17083360	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs17083375	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs17083385	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs17083387	0.83[EUR][1000 genomes]
rs17083389	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs17083393	0.83[EUR][1000 genomes]
rs17083397	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs17083405	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs17083417	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs17083420	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs17083421	1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs17083432	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs17083435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17083441	0.81[EUR][1000 genomes]
rs34349558	0.83[EUR][1000 genomes]
rs3923664	0.86[ASN][1000 genomes]
rs4144169	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4245508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4441982	0.85[ASN][1000 genomes]
rs4458731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4469335	0.82[ASN][1000 genomes]
rs4483022	0.83[EUR][1000 genomes]
rs4487619	0.85[ASN][1000 genomes]
rs4527742	0.83[EUR][1000 genomes]
rs4543411	0.83[EUR][1000 genomes]
rs4580906	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs4585597	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4585603	0.83[EUR][1000 genomes]
rs4945682	0.81[EUR][1000 genomes]
rs4945683	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4946549	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4946551	0.83[EUR][1000 genomes]
rs4946555	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4946556	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4946557	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4946558	0.82[ASN][1000 genomes]
rs4946560	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs4946561	0.86[ASN][1000 genomes]
rs4946566	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4946567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59480217	0.83[EUR][1000 genomes]
rs59945135	0.82[ASN][1000 genomes]
rs61550917	0.86[ASN][1000 genomes]
rs6569184	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6569194	0.83[EUR][1000 genomes]
rs6907975	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6912500	0.83[EUR][1000 genomes]
rs6916773	0.84[EUR][1000 genomes]
rs6920459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6930191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6933263	0.83[EUR][1000 genomes]
rs6933489	0.83[EUR][1000 genomes]
rs6941332	0.83[EUR][1000 genomes]
rs73524557	0.83[EUR][1000 genomes]
rs73526655	0.83[EUR][1000 genomes]
rs73526665	0.83[EUR][1000 genomes]
rs7452947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7762181	0.83[EUR][1000 genomes]
rs7762977	0.81[EUR][1000 genomes]
rs9375017	0.83[EUR][1000 genomes]
rs9387932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv970057	chr6:121663325-121679145	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121661400-121666600	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links