Variant report

Variant	rs17083302
Chromosome Location	chr6:121545881-121545882
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10499102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10499103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10499107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10499108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10499110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17052877	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17083091	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17083156	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17083168	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17083211	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17083268	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17083356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17083358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17083360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17083375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17083385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17083389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17083397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17083405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17083417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17083420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17083421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17083432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17083435	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs17083515	1.00[AFR][1000 genomes]
rs2038838	1.00[AFR][1000 genomes]
rs2358134	1.00[AFR][1000 genomes]
rs2389416	0.90[EUR][1000 genomes]
rs35710769	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923664	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4144169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41488349	1.00[AFR][1000 genomes]
rs4245508	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4441982	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4458731	0.89[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs4469335	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4487619	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4580906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4585597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4945680	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4946534	1.00[AFR][1000 genomes]
rs4946536	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4946544	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4946549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4946552	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4946553	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4946554	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4946555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4946556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4946557	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4946558	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4946560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4946561	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4946566	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4946567	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs59945135	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61550917	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6569184	0.88[ASN][1000 genomes]
rs6920459	0.89[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6930191	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs7452947	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs9387932	0.89[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs9490164	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv527946	chr6:121544876-121552020	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121487400-121556000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:121509600-121575400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:121516000-121560200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:121528400-121551800	Weak transcription	Psoas Muscle	Psoas
5	chr6:121533000-121566800	Weak transcription	Stomach Mucosa	stomach
6	chr6:121535000-121569200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:121536200-121567200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:121536400-121556200	Weak transcription	Primary B cells from cord blood	blood
9	chr6:121536400-121556200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:121536600-121556000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:121536600-121556000	Weak transcription	Pancreas	Pancrea
12	chr6:121536600-121556400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:121536600-121556600	Weak transcription	Left Ventricle	heart
14	chr6:121536600-121558400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:121536600-121566000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:121536600-121568200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:121536600-121585400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:121536800-121556000	Weak transcription	Fetal Stomach	stomach
19	chr6:121536800-121556600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:121536800-121565600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr6:121536800-121566000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:121536800-121566000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:121536800-121566000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:121536800-121584400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:121537000-121584600	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr6:121537200-121556000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:121537200-121556200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:121537200-121556200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:121537200-121562400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:121537400-121556200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:121537400-121556600	Weak transcription	Right Ventricle	heart
32	chr6:121537400-121567800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:121538200-121565800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:121538200-121567000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr6:121538600-121556000	Weak transcription	Fetal Intestine Small	intestine
36	chr6:121538800-121546200	Weak transcription	Fetal Brain Male	brain
37	chr6:121539200-121567600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr6:121539400-121562200	Weak transcription	Fetal Kidney	kidney
39	chr6:121539400-121563200	Weak transcription	Brain Substantia Nigra	brain
40	chr6:121540200-121555800	Weak transcription	Fetal Intestine Large	intestine
41	chr6:121540400-121555800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:121540400-121556200	Weak transcription	Fetal Lung	lung
43	chr6:121540400-121567800	Weak transcription	Adipose Nuclei	Adipose
44	chr6:121541200-121585000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:121541600-121556000	Weak transcription	Primary T cells from cord blood	blood
46	chr6:121542000-121556200	Weak transcription	Ovary	ovary
47	chr6:121544000-121556000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:121544400-121556000	Weak transcription	Dnd41	blood
49	chr6:121544400-121581600	Weak transcription	HSMM	muscle
50	chr6:121544800-121581400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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