Variant report

Variant	rs17083211
Chromosome Location	chr6:121449294-121449295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121449170..121450755-chr6:121455147..121457619,2	MCF-7	breast:
2	chr6:121447900..121449925-chr6:121452116..121453757,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10499102	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs10499103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs10499107	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes]
rs10499108	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs10499110	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs17052877	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17082925	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17082930	0.84[AMR][1000 genomes]
rs17083091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17083156	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17083168	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17083268	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17083302	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17083356	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs17083358	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17083360	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs17083375	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs17083385	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17083389	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17083397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17083405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs17083417	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs17083420	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs17083421	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes]
rs2358134	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs35710769	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3923664	0.90[EUR][1000 genomes]
rs4144169	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes]
rs4245508	0.88[CHB][hapmap]
rs4441982	0.90[EUR][1000 genomes]
rs4458731	0.88[CHB][hapmap]
rs4469335	0.90[EUR][1000 genomes]
rs4487619	1.00[EUR][1000 genomes]
rs4585597	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs4945680	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4945683	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs4946528	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4946530	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4946534	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4946536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4946544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946549	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4946552	0.90[EUR][1000 genomes]
rs4946553	0.90[EUR][1000 genomes]
rs4946554	0.90[EUR][1000 genomes]
rs4946555	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs4946556	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs4946557	1.00[CEU][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs4946560	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs4946561	0.90[EUR][1000 genomes]
rs59945135	0.90[EUR][1000 genomes]
rs61550917	0.90[EUR][1000 genomes]
rs6899528	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6920459	0.88[CHB][hapmap]
rs6930191	0.88[CHB][hapmap]
rs7452947	0.88[CHB][hapmap]
rs9387932	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1812259	chr6:121404112-121451095	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121429600-121455600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:121446800-121464600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:121447000-121450200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:121447000-121451000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:121447000-121455600	Weak transcription	Aorta	Aorta
6	chr6:121447000-121463200	Weak transcription	Ovary	ovary
7	chr6:121447200-121450600	Weak transcription	Fetal Stomach	stomach
8	chr6:121447200-121451400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:121447200-121451400	Weak transcription	Fetal Kidney	kidney
10	chr6:121447200-121451600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:121447200-121451600	Weak transcription	Placenta	Placenta
12	chr6:121447200-121451800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:121447200-121452600	Weak transcription	Brain Angular Gyrus	brain
14	chr6:121447200-121455400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:121447200-121455400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:121447200-121463000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:121447200-121463200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:121447200-121465000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:121447200-121473800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
22	chr6:121447400-121449400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:121447400-121449600	Weak transcription	Brain Anterior Caudate	brain
24	chr6:121447400-121451600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:121447400-121451800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:121447600-121453400	Weak transcription	Dnd41	blood
28	chr6:121447600-121473200	Weak transcription	Primary T cells from cord blood	blood
29	chr6:121447800-121449400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:121447800-121449800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:121447800-121465000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:121448200-121450000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:121448200-121454600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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