Variant report

Variant	rs4946528
Chromosome Location	chr6:121254243-121254244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1572713	1.00[AFR][1000 genomes]
rs17052877	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17082925	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17082930	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17083091	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17083156	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17083168	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17083211	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2358134	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4946530	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4946534	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4946536	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121253000-121256200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:121253200-121255600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:121253200-121260800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:121253600-121254400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr6:121253800-121254400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr6:121253800-121254400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr6:121253800-121254600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr6:121254000-121254600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:121254000-121254600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
10	chr6:121254200-121255000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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