Variant report
| Variant | rs4946530 |
|---|---|
| Chromosome Location | chr6:121324287-121324288 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11961576 | 0.83[ASN][1000 genomes] |
| rs11966429 | 0.83[ASN][1000 genomes] |
| rs1572713 | 1.00[AFR][1000 genomes] |
| rs17052877 | 0.88[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs17082925 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17082930 | 0.97[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17083091 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs17083156 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs17083168 | 1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs17083211 | 0.86[CHB][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs17083268 | 0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes] |
| rs2358134 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4945680 | 1.00[AFR][1000 genomes] |
| rs4946528 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4946534 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4946536 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs4946544 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs4946549 | 1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes] |
| rs55693456 | 0.83[ASN][1000 genomes] |
| rs7754235 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023384 | chr6:121235867-121683448 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv886591 | chr6:121260089-121398535 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv886592 | chr6:121260089-121425387 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv464037 | chr6:121261915-121400981 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv604571 | chr6:121261915-121400981 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv530527 | chr6:121298528-121789855 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:121324000-121325200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
