Variant report

Variant	rs6899528
Chromosome Location	chr6:121473926-121473927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17052877	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17083091	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17083156	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17083168	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17083211	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4945680	0.82[ASN][1000 genomes]
rs4946536	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4946544	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4946549	0.82[ASN][1000 genomes]
rs6899621	0.92[AFR][1000 genomes]
rs6927931	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
3	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:121463600-121474200	Weak transcription	Ovary	ovary
5	chr6:121463600-121476800	Weak transcription	Gastric	stomach
6	chr6:121463800-121474400	Weak transcription	Pancreas	Pancrea
7	chr6:121465400-121474400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:121469400-121477800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:121470000-121474200	Weak transcription	Fetal Stomach	stomach
10	chr6:121470000-121474400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:121471200-121474000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:121472600-121474200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:121472600-121474400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:121472600-121481600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:121473000-121474000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:121473000-121474200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:121473000-121474200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:121473200-121474200	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr6:121473200-121474600	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:121473200-121476200	ZNF genes & repeats	Dnd41	blood
21	chr6:121473400-121480600	Weak transcription	Small Intestine	intestine
22	chr6:121473400-121499000	Weak transcription	Right Ventricle	heart
23	chr6:121473600-121474000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:121473600-121474400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:121473600-121475200	ZNF genes & repeats	Brain Germinal Matrix	brain
26	chr6:121473800-121474400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
27	chr6:121473800-121474600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:121473800-121474600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:121473800-121474600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:121473800-121475200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:121473800-121475600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
32	chr6:121473800-121476000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:121473800-121476400	ZNF genes & repeats	Liver	Liver

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