Variant report

Variant	rs2389416
Chromosome Location	chr6:121680516-121680517
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10499102	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10499103	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10499107	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10499108	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10499110	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17083268	0.90[EUR][1000 genomes]
rs17083302	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17083356	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17083358	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17083360	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17083375	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17083385	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17083389	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17083397	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17083405	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17083417	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17083420	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17083421	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17083432	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17083515	0.87[AMR][1000 genomes]
rs17083518	0.84[AMR][1000 genomes]
rs17083522	0.84[AMR][1000 genomes]
rs17083533	0.84[AMR][1000 genomes]
rs17083633	1.00[CEU][hapmap]
rs2038838	0.87[AMR][1000 genomes]
rs2071166	1.00[CEU][hapmap]
rs35710769	0.90[EUR][1000 genomes]
rs3763174	1.00[CEU][hapmap]
rs3805785	1.00[CEU][hapmap]
rs3923664	0.81[EUR][1000 genomes]
rs4144169	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs41488349	0.81[AMR][1000 genomes]
rs4441982	0.81[EUR][1000 genomes]
rs4469335	0.81[EUR][1000 genomes]
rs4487619	0.90[EUR][1000 genomes]
rs4580906	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4585597	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4945680	0.90[EUR][1000 genomes]
rs4945683	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4946549	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4946552	0.81[EUR][1000 genomes]
rs4946553	0.81[EUR][1000 genomes]
rs4946554	0.81[EUR][1000 genomes]
rs4946555	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4946556	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4946557	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4946560	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4946561	0.81[EUR][1000 genomes]
rs59945135	0.81[EUR][1000 genomes]
rs61550917	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121677200-121683400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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