Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17052912	0.84[ASN][1000 genomes]
rs17083302	1.00[AFR][1000 genomes]
rs17083358	1.00[AFR][1000 genomes]
rs17083385	1.00[AFR][1000 genomes]
rs17083389	1.00[AFR][1000 genomes]
rs17083397	1.00[AFR][1000 genomes]
rs17083432	1.00[AFR][1000 genomes]
rs17083515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083518	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17083522	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17083533	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17083616	0.84[ASN][1000 genomes]
rs17083618	0.83[ASN][1000 genomes]
rs17083633	0.91[EUR][1000 genomes]
rs2071166	0.91[EUR][1000 genomes]
rs2389416	0.87[AMR][1000 genomes]
rs2892767	0.84[ASN][1000 genomes]
rs35710769	1.00[AFR][1000 genomes]
rs3763174	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3805785	0.91[EUR][1000 genomes]
rs3805788	0.91[EUR][1000 genomes]
rs41488349	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs62427607	0.83[ASN][1000 genomes]
rs6911179	0.84[ASN][1000 genomes]
rs6917166	0.83[ASN][1000 genomes]
rs6932422	0.84[ASN][1000 genomes]
rs73532207	0.82[ASN][1000 genomes]
rs9490224	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121717000-121718200	Enhancers	Fetal Intestine Small	intestine
2	chr6:121717000-121720200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:121717000-121722000	Enhancers	Fetal Intestine Large	intestine
4	chr6:121717400-121718000	Enhancers	Duodenum Mucosa	Duodenum
5	chr6:121717600-121726600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: